Construct: ORF ccsbBroadEn_05945

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009927.1_s300c1, BRDN0000389249
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCKBR (887)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 887 CCKBR cholecystokinin B receptor NM_176875.4 99.9% 100% 423C>T
2 human 887 CCKBR cholecystokinin B receptor NM_001363552.2 86.5% 86.6% 423C>T;809_1015del
3 human 887 CCKBR cholecystokinin B receptor XM_017018516.1 85.1% 85.2% 0_1ins198;225C>T
4 human 887 CCKBR cholecystokinin B receptor NM_001318029.2 81.1% 81.2% 150_151ins252;171C>T
5 mouse 12426 Cckbr cholecystokinin B receptor NM_007627.5 83.9% 87.6% (many diffs)
6 mouse 12426 Cckbr cholecystokinin B receptor XM_006507280.3 83.8% 87.4% (many diffs)
7 mouse 12426 Cckbr cholecystokinin B receptor XM_006507281.3 48.3% 50.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1407
ORF length:
1341
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCTGCTAAAG CTGAACCGGA GCGTGCAGGG AACCGGACCC GGGCCGGGGG
121CTTCCCTGTG CCGCCCGGGG GCGCCTCTCC TCAACAGCAG CAGTGTGGGC AACCTCAGCT
181GCGAGCCCCC TCGCATTCGC GGAGCCGGGA CACGAGAATT GGAGCTGGCC ATTAGAATCA
241CTCTTTACGC AGTGATCTTC CTGATGAGCG TTGGAGGAAA TATGCTCATC ATCGTGGTCC
301TGGGACTGAG CCGCCGCCTG AGGACTGTCA CCAATGCCTT CCTCCTCTCA CTGGCAGTCA
361GCGACCTCCT GCTGGCTGTG GCTTGCATGC CCTTCACCCT CCTGCCCAAT CTCATGGGCA
421CATTCATCTT TGGCACCGTC ATCTGCAAGG CGGTTTCCTA CCTCATGGGG GTGTCTGTGA
481GTGTGTCTAC GCTAAGCCTC GTGGCCATCG CACTGGAGCG GTACAGCGCC ATCTGCCGAC
541CACTGCAGGC ACGAGTGTGG CAGACGCGCT CCCACGCGGC TCGCGTGATT GTAGCCACGT
601GGCTGCTGTC CGGACTACTC ATGGTGCCCT ACCCCGTGTA CACTGTCGTG CAACCAGTGG
661GGCCTCGTGT GCTGCAGTGC GTGCATCGCT GGCCCAGTGC GCGGGTCCGC CAGACCTGGT
721CCGTACTGCT GCTTCTGCTC TTGTTCTTCA TCCCGGGTGT GGTTATGGCC GTGGCCTACG
781GGCTTATCTC TCGCGAGCTC TACTTAGGGC TTCGCTTTGA CGGCGACAGT GACAGCGACA
841GCCAAAGCAG GGTCCGAAAC CAAGGCGGGC TGCCAGGGGC TGTTCACCAG AACGGGCGTT
901GCCGGCCTGA GACTGGCGCG GTTGGCGAAG ACAGCGATGG CTGCTACGTG CAACTTCCAC
961GTTCCCGGCC TGCCCTGGAG CTGACGGCGC TGACGGCTCC TGGGCCGGGA TCCGGCTCCC
1021GGCCCACCCA GGCCAAGCTG CTGGCTAAGA AGCGCGTGGT GCGAATGTTG CTGGTGATCG
1081TTGTGCTTTT TTTTCTGTGT TGGTTGCCAG TTTATAGTGC CAACACGTGG CGCGCCTTTG
1141ATGGCCCGGG TGCACACCGA GCACTCTCGG GTGCTCCTAT CTCCTTCATT CACTTGCTGA
1201GCTACGCCTC GGCCTGTGTC AACCCCCTGG TCTACTGCTT CATGCACCGT CGCTTTCGCC
1261AGGCCTGCCT GGAAACTTGC GCTCGCTGCT GCCCCCGGCC TCCACGAGCT CGCCCCAGGG
1321CTCTTCCCGA TGAGGACCCT CCCACTCCCT CCATTGCTTC GCTGTCCAGG CTTAGCTACA
1381CCACCATCAG CACACTGGGC CCTGGCTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1441gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)