Construct: ORF ccsbBroadEn_06073

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013139.1_s300c1, BRDN0000394146
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CYP3A7 (1551)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1551 CYP3A7 cytochrome P450 family 3 su... NM_000765.5 99.9% 100% 945C>T
2 human 1576 CYP3A4 cytochrome P450 family 3 su... NM_017460.6 94.3% 88.4% (many diffs)
3 human 1576 CYP3A4 cytochrome P450 family 3 su... NM_001202855.3 94.2% 88.2% (many diffs)
4 human 100861540 CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough NM_001256497.3 93.8% 93.2% (many diffs)
5 human 1577 CYP3A5 cytochrome P450 family 3 su... NM_000777.5 88.4% 81.7% (many diffs)
6 human 1577 CYP3A5 cytochrome P450 family 3 su... NM_001291830.2 85.7% 77.9% (many diffs)
7 human 1577 CYP3A5 cytochrome P450 family 3 su... NM_001291829.2 68.8% 63.2% (many diffs)
8 human 1577 CYP3A5 cytochrome P450 family 3 su... NR_033807.3 40.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1575
ORF length:
1509
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TCTCATCCCA AACTTGGCCG TGGAAACCTG GCTTCTCCTG GCTGTCAGCC
121TGATACTCCT CTATCTATAT GGAACCCGTA CACATGGACT TTTTAAGAAG CTTGGAATTC
181CAGGGCCCAC ACCTCTGCCT TTTTTGGGAA ATGCTTTGTC CTTCCGTAAG GGCTATTGGA
241CGTTTGACAT GGAATGTTAT AAAAAGTATA GAAAAGTCTG GGGTATTTAT GACTGTCAAC
301AGCCTATGCT GGCTATCACA GATCCCGACA TGATCAAAAC AGTGCTAGTG AAAGAATGTT
361ATTCTGTCTT CACAAACCGG AGGCCTTTCG GGCCAGTGGG ATTTATGAAA AATGCCATCT
421CTATAGCTGA GGATGAAGAA TGGAAGAGAA TACGATCATT GCTGTCTCCA ACATTCACCA
481GCGGAAAACT CAAGGAGATG GTCCCTATCA TTGCCCAGTA TGGAGATGTG TTGGTGAGAA
541ATCTGAGGCG GGAAGCAGAG ACAGGCAAGC CTGTCACCTT GAAACACGTC TTTGGGGCCT
601ACAGCATGGA TGTGATCACT AGCACATCAT TTGGAGTGAG CATCGACTCT CTCAACAATC
661CACAAGACCC CTTTGTGGAA AACACCAAGA AGCTTTTAAG ATTTAATCCA TTAGATCCAT
721TCGTTCTCTC AATAAAAGTC TTTCCATTCC TTACCCCAAT TCTTGAAGCA TTAAATATCA
781CTGTGTTTCC AAGAAAAGTT ATAAGTTTTC TAACAAAATC TGTAAAACAG ATAAAAGAAG
841GTCGCCTCAA AGAGACACAA AAGCACCGAG TGGATTTCCT TCAGCTGATG ATTGACTCTC
901AGAATTCAAA AGACTCTGAG ACCCACAAAG CTCTGTCTGA TCTGGAGCTC ATGGCCCAAT
961CAATTATCTT TATTTTTGCT GGCTATGAAA CCACGAGCAG TGTTCTCTCT TTCATTATAT
1021ATGAACTGGC CACTCACCCT GATGTCCAGC AGAAAGTGCA GAAGGAAATT GATACAGTTT
1081TACCCAATAA GGCACCACCC ACCTATGATA CTGTGCTACA GTTGGAGTAT CTTGACATGG
1141TGGTGAATGA AACACTCAGA TTATTCCCAG TTGCTATGAG ACTTGAGAGG GTCTGCAAAA
1201AAGATGTTGA AATCAATGGG ATGTTTATTC CCAAAGGGGT GGTGGTGATG ATTCCAAGCT
1261ATGTTCTTCA TCATGACCCA AAGTACTGGA CAGAGCCTGA GAAGTTCCTC CCTGAAAGGT
1321TCAGTAAAAA GAACAAGGAC AACATAGATC CTTACATATA CACACCCTTT GGAAGTGGAC
1381CCAGAAACTG CATTGGCATG AGGTTTGCTC TCGTGAACAT GAAACTTGCT CTAGTCAGAG
1441TCCTTCAGAA CTTCTCCTTC AAACCTTGTA AAGAAACACA GATCCCCCTG AAATTACGCT
1501TTGGAGGACT TCTTCTAACA GAAAAACCCA TTGTTCTAAA GGCTGAGTCA AGGGATGAGA
1561CCGTAAGTGG AGCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1621tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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