Construct: ORF ccsbBroadEn_06211

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014122.1_s300c1, BRDN0000456759
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGFR2 (2263)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2263 FGFR2 fibroblast growth factor re... NM_001144918.2 99.9% 100% 351A>G
2 human 2263 FGFR2 fibroblast growth factor re... NM_001144916.1 99.6% 99.7% 351A>G;937_942delGTAACA
3 human 2263 FGFR2 fibroblast growth factor re... XM_017015924.2 97% 97.1% 1_57del;408A>G;994_999delGTAACA
4 human 2263 FGFR2 fibroblast growth factor re... NM_023029.2 96.1% 96% 110_187del;429A>G;1015_1020delGTAACA
5 human 2263 FGFR2 fibroblast growth factor re... XM_024447889.1 93.9% 93.8% 1_57del;167_244del;486A>G
6 human 2263 FGFR2 fibroblast growth factor re... XM_024447887.1 93.6% 93.6% (many diffs)
7 human 2263 FGFR2 fibroblast growth factor re... XM_024447891.1 93.4% 93.4% (many diffs)
8 human 2263 FGFR2 fibroblast growth factor re... XM_017015925.2 92.3% 92.2% (many diffs)
9 human 2263 FGFR2 fibroblast growth factor re... NM_001144915.1 90.6% 89.3% (many diffs)
10 human 2263 FGFR2 fibroblast growth factor re... XM_024447888.1 90.4% 90.2% (many diffs)
11 human 2263 FGFR2 fibroblast growth factor re... XM_024447890.1 90.2% 90% (many diffs)
12 human 2263 FGFR2 fibroblast growth factor re... NM_001320658.2 85.9% 85.8% 110_454del;696A>G
13 human 2263 FGFR2 fibroblast growth factor re... NM_000141.4 85.7% 85.6% 110_454del;696A>G;1282_1287delGTAACA
14 human 2263 FGFR2 fibroblast growth factor re... NM_001144919.2 85.3% 85% (many diffs)
15 human 2263 FGFR2 fibroblast growth factor re... NM_022970.3 82.6% 82.4% (many diffs)
16 human 2263 FGFR2 fibroblast growth factor re... NM_001320654.1 82.5% 80.2% (many diffs)
17 human 2263 FGFR2 fibroblast growth factor re... XM_006717708.3 80.9% 80.7% (many diffs)
18 human 2263 FGFR2 fibroblast growth factor re... XM_017015921.2 79.6% 79.4% (many diffs)
19 human 2263 FGFR2 fibroblast growth factor re... XM_017015920.2 76.7% 76.3% (many diffs)
20 human 2263 FGFR2 fibroblast growth factor re... XM_006717710.4 76.5% 76.1% (many diffs)
21 human 2263 FGFR2 fibroblast growth factor re... NM_001144913.1 76.2% 75.8% (many diffs)
22 human 2263 FGFR2 fibroblast growth factor re... NM_001144914.1 72% 71.9% (many diffs)
23 human 2263 FGFR2 fibroblast growth factor re... NM_001144917.2 71.9% 71.9% 110_454del;696A>G;937_938ins342
24 human 2263 FGFR2 fibroblast growth factor re... XM_024447892.1 60.7% 60.7% 0_1ins825;112_117delGTAACA
25 human 2263 FGFR2 fibroblast growth factor re... NR_073009.2 47.6% (many diffs)
26 mouse 14183 Fgfr2 fibroblast growth factor re... NM_001347638.1 89.3% 96.2% (many diffs)
27 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507357.3 89.1% 96% (many diffs)
28 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241675.2 86% 92.5% (many diffs)
29 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241677.2 85.8% 92.5% (many diffs)
30 mouse 14183 Fgfr2 fibroblast growth factor re... NM_201601.2 85.6% 92.3% (many diffs)
31 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241676.2 82.8% 89.2% (many diffs)
32 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507354.3 82.6% 88.9% (many diffs)
33 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241674.2 77% 82.9% (many diffs)
34 mouse 14183 Fgfr2 fibroblast growth factor re... NM_010207.2 76.9% 82.7% (many diffs)
35 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507350.3 74.1% 79.7% (many diffs)
36 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507349.2 74% 79.5% (many diffs)
37 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241673.2 74% 79.5% (many diffs)
38 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321975.1 74% 79.5% (many diffs)
39 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321977.1 73.3% 78.6% (many diffs)
40 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321976.1 70.4% 75.5% (many diffs)
41 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507352.2 70.2% 75.3% (many diffs)
42 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785477.1 29% (many diffs)
43 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785478.1 28.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2181
ORF length:
2112
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTCAGCTGG GGTCGTTTCA TCTGCCTGGT CGTGGTCACC ATGGCAACCT
121TGTCCCTGGC CCGGCCCTCC TTCAGTTTAG TTGAGGATAC CACATTAGAG CCAGAAGGAG
181CACCATACTG GACCAACACA GAAAAGATGG AAAAGCGGCT CCATGCTGTG CCTGCGGCCA
241ACACTGTCAA GTTTCGCTGC CCAGCCGGGG GGAACCCAAT GCCAACCATG CGGTGGCTGA
301AAAACGGGAA GGAGTTTAAG CAGGAGCATC GCATTGGAGG CTACAAGGTA CGAAACCAGC
361ACTGGAGCCT CATTATGGAA AGTGTGGTCC CATCTGACAA GGGAAATTAT ACCTGTGTGG
421TGGAGAATGA ATACGGGTCC ATCAATCACA CGTACCACCT GGATGTTGTG GAGCGATCGC
481CTCACCGGCC CATCCTCCAA GCCGGACTGC CGGCAAATGC CTCCACAGTG GTCGGAGGAG
541ACGTAGAGTT TGTCTGCAAG GTTTACAGTG ATGCCCAGCC CCACATCCAG TGGATCAAGC
601ACGTGGAAAA GAACGGCAGT AAATACGGGC CCGACGGGCT GCCCTACCTC AAGGTTCTCA
661AGGCCGCCGG TGTTAACACC ACGGACAAAG AGATTGAGGT TCTCTATATT CGGAATGTAA
721CTTTTGAGGA CGCTGGGGAA TATACGTGCT TGGCGGGTAA TTCTATTGGG ATATCCTTTC
781ACTCTGCATG GTTGACAGTT CTGCCAGCGC CTGGAAGAGA AAAGGAGATT ACAGCTTCCC
841CAGACTACCT GGAGATAGCC ATTTACTGCA TAGGGGTCTT CTTAATCGCC TGTATGGTGG
901TAACAGTCAT CCTGTGCCGA ATGAAGAACA CGACCAAGAA GCCAGACTTC AGCAGCCAGC
961CGGCTGTGCA CAAGCTGACC AAACGTATCC CCCTGCGGAG ACAGGTTTCG GCTGAGTCCA
1021GCTCCTCCAT GAACTCCAAC ACCCCGCTGG TGAGGATAAC AACACGCCTC TCTTCAACGG
1081CAGACACCCC CATGCTGGCA GGGGTCTCCG AGTATGAACT TCCAGAGGAC CCAAAATGGG
1141AGTTTCCAAG AGATAAGCTG ACACTGGGCA AGCCCCTGGG AGAAGGTTGC TTTGGGCAAG
1201TGGTCATGGC GGAAGCAGTG GGAATTGACA AAGACAAGCC CAAGGAGGCG GTCACCGTGG
1261CCGTGAAGAT GTTGAAAGAT GATGCCACAG AGAAAGACCT TTCTGATCTG GTGTCAGAGA
1321TGGAGATGAT GAAGATGATT GGGAAACACA AGAATATCAT AAATCTTCTT GGAGCCTGCA
1381CACAGGATGG GCCTCTCTAT GTCATAGTTG AGTATGCCTC TAAAGGCAAC CTCCGAGAAT
1441ACCTCCGAGC CCGGAGGCCA CCCGGGATGG AGTACTCCTA TGACATTAAC CGTGTTCCTG
1501AGGAGCAGAT GACCTTCAAG GACTTGGTGT CATGCACCTA CCAGCTGGCC AGAGGCATGG
1561AGTACTTGGC TTCCCAAAAA TGTATTCATC GAGATTTAGC AGCCAGAAAT GTTTTGGTAA
1621CAGAAAACAA TGTGATGAAA ATAGCAGACT TTGGACTCGC CAGAGATATC AACAATATAG
1681ACTATTACAA AAAGACCACC AATGGGCGGC TTCCAGTCAA GTGGATGGCT CCAGAAGCCC
1741TGTTTGATAG AGTATACACT CATCAGAGTG ATGTCTGGTC CTTCGGGGTG TTAATGTGGG
1801AGATCTTCAC TTTAGGGGGC TCGCCCTACC CAGGGATTCC CGTGGAGGAA CTTTTTAAGC
1861TGCTGAAGGA AGGACACAGA ATGGATAAGC CAGCCAACTG CACCAACGAA CTGTACATGA
1921TGATGAGGGA CTGTTGGCAT GCAGTGCCCT CCCAGAGACC AACGTTCAAG CAGTTGGTAG
1981AAGACTTGGA TCGAATTCTC ACTCTCACAA CCAATGAGGA ATACTTGGAC CTCAGCCAAC
2041CTCTCGAACA GTATTCACCT AGTTACCCTG ACACAAGAAG TTCTTGTTCT TCAGGAGATG
2101ATTCTGTTTT TTCTCCAGAC CCCATGCCTT ACGAACCATG CCTTCCTCAG TATCCACACA
2161TAAACGGCAG TGTTAAAACA TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2221attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)