Construct: ORF ccsbBroadEn_06488
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007365.1_s300c1, BRDN0000390392
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR2DL4 (3805)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_002255.6 | 99.6% | 99.4% | (many diffs) |
| 2 | human | 112268354 | LOC112268354 | killer cell immunoglobulin-... | NM_001368253.1 | 99.6% | 99.2% | (many diffs) |
| 3 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080770.2 | 90.4% | 89.9% | (many diffs) |
| 4 | human | 57292 | KIR2DL5A | killer cell immunoglobulin ... | NM_020535.3 | 87.9% | 78.5% | (many diffs) |
| 5 | human | 553128 | KIR2DL5B | killer cell immunoglobulin ... | NM_001018081.1 | 87.6% | 77.4% | (many diffs) |
| 6 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080772.2 | 72.1% | 71% | (many diffs) |
| 7 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 63.8% | 53.4% | (many diffs) |
| 8 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 62.2% | 52.2% | (many diffs) |
| 9 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 62.1% | 52% | (many diffs) |
| 10 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 60.6% | 50.3% | (many diffs) |
| 11 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 57.7% | 48.4% | (many diffs) |
| 12 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 55.9% | 48.6% | (many diffs) |
| 13 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 50.6% | 40.9% | (many diffs) |
| 14 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 50.6% | 40.9% | (many diffs) |
| 15 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 48% | 41.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1197
- ORF length:
- 1131
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CATGTCACCC ACGGTCATCA TCCTGGCATG TCTTGGGTTC TTCTTGGACC 121 AGAGTGTGTG GGCACACGTG GGTGGTCAGG ACAAGCCCTT CTGCTCTGCC TGGCCCAGCG 181 CTGTGGTGCC TCAAGGAGGA CACGTGACTC TTCGGTGTCA CTATCGTCGT GGGTTTAACA 241 TCTTCACGCT GTACAAGAAA GATGGGGTCC CTGTCCCTGA GCTCTACAAC AGAATATTCT 301 GGAACAGTTT CCTCATTAGC CCTGTGACCC CAGCACACGC AGGGACCTAC AGATGTCGAG 361 GTTTTCACCC GCACTCCCCC ACTGAGTGGT CGGCACCCAG CAACCCCCTG GTGATCATGG 421 TCACAGGTCT ATATGAGAAA CCTTCGCTTA CAGCCCGGCC GGGCCCCACG GTTCGCACAG 481 GAGAGAACGT GACCTTGTCC TGCAGCTCCC AGAGCTCCTT TGACATCTAC CATCTATCCA 541 GGGAGGGGGA AGCCCATGAA CTTAGGCTCC CTGCAGTGCC CAGCATCAAT GGAACATTCC 601 AGGCCGACTT CCCTCTGGGT CCTGCCACCC ACGGAGAGAC CTACAGATGC TTCGGCTCTT 661 TCCATGGATC TCCCTACGAG TGGTCAGACG CGAGTGACCC ACTGCCTGTT TCTGTCACAG 721 GAAACCCTTC TAGTAGTTGG CCTTCACCCA CTGAACCAAG CTTCAAAACT GGTATCGCCA 781 GACACCTGCA TGCTGTGATT AGGTACTCAG TGGCCATCAT CCTCTTCACC ATCCTTCCCT 841 TCTTTCTCCT TCATCGCTGG TGCTCCAAAA AAAAAAATGC TGCTGTAATG AACCAAGAGC 901 CTGCGGGACA CAGAACAGTG AACAGGGAGG ACTCTGATGA ACAAGACCCT CAGGAGGTGA 961 CATACGCACA GTTGGATCAC TGCATTTTCA CACAGAGAAA AATCACTGGC CCTTCTCAGA 1021 GGAGCAAGAG ACCCTCAACA GATACCAGCG TGTGTATAGA ACTTCCAAAT GCTGAGCCCA 1081 GAGCGTTATC TCCTGCCCAT GAGCACCACA GTCAGGCCTT GATGGGATCT TCTAGGGAGA 1141 CAACAGCCCT GTCTCAAACC CAGCTTGCCA GCTCTAATGT ACCAGCAGCT GGAATCTGCC 1201 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1261 aac