Transcript: Human NM_001080772.2

Homo sapiens killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4 (KIR2DL4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
KIR2DL4 (3805)
Length:
1581
CDS:
43..864

Additional Resources:

NCBI RefSeq record:
NM_001080772.2
NBCI Gene record:
KIR2DL4 (3805)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001080772.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427071 GGCATCAGCAAACCTTATAAA pLKO_005 1506 3UTR 100% 15.000 7.500 Y KIR2DL4 n/a
2 TRCN0000061587 GACACCTGCATGCTGTGATTA pLKO.1 758 CDS 100% 13.200 6.600 Y KIR2DL4 n/a
3 TRCN0000412694 GAGCTCTACAACAGAATATTC pLKO_005 256 CDS 100% 13.200 6.600 Y KIR3DL3 n/a
4 TRCN0000421852 TCCTTTGCTTAGCCCACAATT pLKO_005 1288 3UTR 100% 13.200 6.600 Y KIR2DS5 n/a
5 TRCN0000426267 ATATGAGAAACCTTCGCTTAC pLKO_005 408 CDS 100% 6.000 3.000 Y KIR2DL4 n/a
6 TRCN0000061586 GCCCAGCATCAATGGAACATT pLKO.1 555 CDS 100% 5.625 2.813 Y KIR2DL4 n/a
7 TRCN0000056989 CTACAGATGCTTCGGCTCTTT pLKO.1 618 CDS 100% 4.950 2.475 Y KIR2DS1 n/a
8 TRCN0000061584 GACCTACAGATGTCGAGGTTT pLKO.1 321 CDS 100% 4.950 2.475 Y KIR2DL4 n/a
9 TRCN0000061585 GTTTAACATCTTCACGCTGTA pLKO.1 210 CDS 100% 4.050 2.025 Y KIR2DL4 n/a
10 TRCN0000056931 CAGGTCTATATGAGAAACCTT pLKO.1 401 CDS 100% 3.000 1.500 Y KIR2DS5 n/a
11 TRCN0000061583 GCGTGTGTATAGAACTTCCAA pLKO.1 1024 3UTR 100% 3.000 1.500 Y KIR2DL4 n/a
12 TRCN0000437846 GACCCTCAGGAGGTGACATAT pLKO_005 921 3UTR 100% 13.200 6.600 Y KIR2DL5A n/a
13 TRCN0000061714 GAACAGTGAACAGGGAGGATT pLKO.1 889 3UTR 100% 4.950 2.475 Y KIR2DS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001080772.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06488 pDONR223 100% 72.1% 71% None (many diffs) n/a
2 ccsbBroad304_06488 pLX_304 0% 72.1% 71% V5 (many diffs) n/a
3 TRCN0000480702 ACTCACGGACTGCAGTACACGCGC pLX_317 26.5% 72.1% 71% V5 (many diffs) n/a
4 ccsbBroadEn_13889 pDONR223 100% 60.8% 35.3% None (many diffs) n/a
5 ccsbBroadEn_00908 pDONR223 100% 60.7% 51.5% None (many diffs) n/a
6 ccsbBroad304_00908 pLX_304 0% 60.7% 51.5% V5 (many diffs) n/a
7 TRCN0000472352 TATTAACAAGCCGTGATAGGACCA pLX_317 26.7% 60.7% 51.5% V5 (many diffs) n/a
8 ccsbBroadEn_06489 pDONR223 100% 52.3% 44.1% None (many diffs) n/a
9 ccsbBroad304_06489 pLX_304 0% 52.3% 44.1% V5 (many diffs) n/a
10 TRCN0000469534 TAGGTTCAGTACAATACTGACCCA pLX_317 32.5% 52.3% 44.1% V5 (many diffs) n/a
11 ccsbBroadEn_00907 pDONR223 100% 50.6% 43.5% None (many diffs) n/a
12 ccsbBroad304_00907 pLX_304 0% 50.6% 43.5% V5 (many diffs) n/a
13 TRCN0000492063 GACTAACCGAGACGTTGGGATCTG pLX_317 9.5% 50.6% 43.5% V5 (many diffs) n/a
14 ccsbBroadEn_09418 pDONR223 100% 50.2% 42.8% None (many diffs) n/a
15 ccsbBroad304_09418 pLX_304 0% 50.2% 42.8% V5 (many diffs) n/a
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