Construct: ORF ccsbBroadEn_06692

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008855.1_s300c1, BRDN0000393344
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGC3 (5098)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5098 PCDHGC3 protocadherin gamma subfami... NM_002588.4 99.9% 100% 2115T>C
2 human 5098 PCDHGC3 protocadherin gamma subfami... NM_032402.2 86.7% 86.2% (many diffs)
3 human 5098 PCDHGC3 protocadherin gamma subfami... NM_032403.3 14% 13.4% (many diffs)
4 mouse 93706 Pcdhgc3 protocadherin gamma subfami... NM_033581.3 88.1% 92% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2868
ORF length:
2802
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CCCAGAGGCC TGGAGGAGCG GACTGGTAAG CACCGGGAGG GTAGTGGGAG
121TTTTGCTTCT GCTTGGTGCC TTGAACAAGG CTTCCACGGT CATTCACTAT GAGATCCCGG
181AGGAAAGAGA GAAGGGTTTC GCTGTGGGCA ACGTGGTCGC GAACCTTGGT TTGGATCTCG
241GTAGCCTCTC AGCCCGCAGG TTCCGGGTGG TGTCTGGAGC TAGCCGAAGA TTCTTTGAGG
301TGAACCGGGA GACCGGAGAG ATGTTTGTGA ACGACCGTCT GGATCGAGAG GAGCTGTGTG
361GGACACTGCC CTCTTGCACT GTAACTCTGG AGTTGGTAGT GGAGAACCCG CTGGAGCTGT
421TCAGCGTGGA AGTGGTGATC CAGGACATCA ACGACAACAA TCCTGCTTTC CCTACCCAGG
481AAATGAAATT GGAGATTAGC GAGGCCGTGG CTCCGGGGAC GCGCTTTCCG CTCGAGAGCG
541CGCACGATCC CGATGTGGGA AGCAACTCTT TACAAACCTA TGAGCTGAGC CGAAATGAAT
601ACTTTGCGCT TCGCGTGCAG ACGCGGGAGG ACAGCACCAA GTACGCGGAG CTGGTGTTGG
661AGCGCGCCCT GGACCGAGAA CGGGAGCCTA GTCTCCAGTT AGTGCTGACG GCGTTGGACG
721GAGGGACCCC AGCTCTCTCC GCCAGCCTGC CTATTCACAT CAAGGTGCTG GACGCGAATG
781ACAATGCGCC TGTCTTCAAC CAGTCCTTGT ACCGGGCGCG CGTCCTGGAG GATGCACCCT
841CCGGCACGCG CGTGGTACAA GTCCTTGCAA CGGATCTGGA TGAAGGCCCC AACGGTGAAA
901TTATTTACTC CTTCGGCAGC CACAACCGCG CCGGCGTGCG GCAACTATTC GCCTTAGACC
961TTGTAACCGG GATGCTGACA ATCAAGGGTC GGCTGGACTT CGAGGACACC AAACTCCATG
1021AGATTTACAT CCAGGCCAAA GACAAGGGCG CCAATCCCGA AGGAGCACAT TGCAAAGTGT
1081TGGTGGAGGT TGTGGATGTG AATGACAACG CCCCGGAGAT CACAGTCACC TCCGTGTACA
1141GCCCAGTACC CGAGGATGCC CCTCTGGGGA CTGTCATCGC TTTGCTCAGT GTGACTGACC
1201TGGATGCTGG CGAGAACGGG CTGGTGACCT GCGAAGTTCC ACCGGGTCTC CCTTTCAGCC
1261TTACTTCTTC CCTCAAGAAT TACTTCACTT TGAAAACCAG TGCAGACCTG GATCGGGAGA
1321CTGTGCCAGA ATACAACCTC AGCATCACCG CCCGAGACGC CGGAACCCCT TCCCTCTCAG
1381CCCTTACAAT AGTGCGTGTT CAAGTGTCCG ACATCAATGA CAACCCTCCA CAATCTTCTC
1441AATCTTCCTA CGACGTTTAC ATTGAAGAAA ACAACCTCCC CGGGGCTCCA ATACTAAACC
1501TAAGTGTCTG GGACCCCGAC GCCCCGCAGA ATGCTCGGCT TTCTTTCTTT CTCTTGGAGC
1561AAGGAGCTGA AACCGGGCTA GTGGGTCGCT ATTTCACAAT AAATCGTGAC AATGGCATAG
1621TGTCATCCTT AGTGCCCCTA GACTATGAGG ATCGGCGGGA ATTTGAATTA ACAGCTCATA
1681TCAGCGATGG GGGCACCCCG GTCCTAGCCA CCAACATCAG CGTGAACATA TTTGTCACTG
1741ATCGCAATGA CAATGCCCCC CAGGTCCTAT ATCCTCGGCC AGGTGGGAGC TCGGTGGAGA
1801TGCTGCCTCG AGGTACCTCA GCTGGCCACC TAGTGTCACG GGTGGTAGGC TGGGACGCGG
1861ATGCAGGGCA CAATGCCTGG CTCTCCTACA GTCTCTTGGG ATCCCCTAAC CAGAGCCTTT
1921TTGCCATAGG GCTGCACACT GGTCAAATCA GTACTGCCCG TCCAGTCCAA GACACAGATT
1981CACCCAGGCA GACTCTCACG GTCTTGATCA AAGACAATGG GGAGCCTTCG CTCTCCACCA
2041CTGCTACCCT CACTGTGTCA GTAACCGAGG ACTCTCCTGA AGCCCGAGCC GAGTTCCCCT
2101CTGGCTCTGC CCCCCGGGAG CAGAAAAAAA ATCTCACCTT TTATCTACTT CTTTCTCTAA
2161TCCTGGTTTC TGTGGGGTTC GTGGTCACAG TGTTCGGAGT AATCATATTC AAAGTTTACA
2221AGTGGAAGCA GTCTAGAGAC CTATACCGAG CCCCGGTGAG CTCACTGTAC CGAACACCAG
2281GGCCCTCCTT GCACGCGGAC GCCGTGCGGG GAGGCCTGAT GTCGCCGCAC CTTTACCATC
2341AGGTGTATCT CACCACGGAC TCCCGCCGCA GCGACCCGCT GCTGAAGAAA CCTGGTGCAG
2401CCAGTCCACT GGCCAGCCGC CAGAACACGC TGCGGAGCTG TGATCCGGTG TTCTATAGGC
2461AGGTGTTGGG TGCAGAGAGC GCCCCTCCCG GACAGCAAGC CCCGCCCAAC ACGGACTGGC
2521GTTTCTCTCA GGCCCAGAGA CCCGGCACCA GCGGCTCCCA AAATGGCGAT GACACCGGCA
2581CCTGGCCCAA CAACCAGTTT GACACAGAGA TGCTGCAAGC CATGATCTTG GCGTCCGCCA
2641GTGAAGCTGC TGATGGGAGC TCCACCCTGG GAGGGGGTGC CGGCACCATG GGATTGAGCG
2701CCCGCTACGG ACCCCAGTTC ACCCTGCAGC ACGTGCCCGA CTACCGCCAG AATGTCTACA
2761TCCCAGGCAG CAATGCCACA CTGACCAACG CAGCTGGCAA GCGGGATGGC AAGGCCCCAG
2821CAGGTGGCAA TGGCAACAAG AAGAAGTCGG GCAAGAAGGA GAAGAAGTAC CCAACTTTCT
2881TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)