Transcript: Human NM_032402.2

Homo sapiens protocadherin gamma subfamily C, 3 (PCDHGC3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
PCDHGC3 (5098)
Length:
2830
CDS:
152..2743

Additional Resources:

NCBI RefSeq record:
NM_032402.2
NBCI Gene record:
PCDHGC3 (5098)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032402.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425531 ACCTATGAGCTGAGCCGAAAT pLKO_005 662 CDS 100% 10.800 15.120 N PCDHGC3 n/a
2 TRCN0000435402 ATTCGCCTTAGACCTTGTAAC pLKO_005 1033 CDS 100% 10.800 15.120 N PCDHGC3 n/a
3 TRCN0000413699 CTCTCACGGTCTTGATCAAAG pLKO_005 2079 CDS 100% 10.800 15.120 N PCDHGC3 n/a
4 TRCN0000421475 TCAATCTTCCTACGACGTTTA pLKO_005 1525 CDS 100% 10.800 15.120 N PCDHGC3 n/a
5 TRCN0000055641 CCCTCAAGAATTACTTCACTT pLKO.1 1356 CDS 100% 4.950 6.930 N PCDHGC3 n/a
6 TRCN0000055638 GCCCTTACAATAGTGCGTGTT pLKO.1 1466 CDS 100% 4.050 5.670 N PCDHGC3 n/a
7 TRCN0000055639 CGGTGAAATTATTTACTCCTT pLKO.1 979 CDS 100% 2.640 3.696 N PCDHGC3 n/a
8 TRCN0000421671 GGGTCGCTATTTCACAATAAA pLKO_005 1669 CDS 100% 15.000 10.500 N PCDHGC3 n/a
9 TRCN0000055640 CCAGGAAATGAAATTGGAGAT pLKO.1 562 CDS 100% 4.050 2.835 N PCDHGC3 n/a
10 TRCN0000055642 GCACCTTTACCATCAGGTGTA pLKO.1 2413 CDS 100% 0.405 0.284 N PCDHGC3 n/a
11 TRCN0000436426 TCGGGAGACTGTGCCAGAATA pLKO_005 1399 CDS 100% 13.200 7.920 N PCDHGC3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032402.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000480695 TTTATGGTGTACGTAAATGCAATC pLX_317 12.9% 89.3% 94% V5 (not translated due to prior stop codon) (many diffs) n/a
2 ccsbBroadEn_15518 pDONR223 0% 86.7% 86.2% None (many diffs) n/a
3 ccsbBroad304_15518 pLX_304 0% 86.7% 86.2% V5 (many diffs) n/a
4 ccsbBroadEn_06692 pDONR223 100% 86.7% 86.2% None (many diffs) n/a
5 ccsbBroad304_06692 pLX_304 0% 86.7% 86.2% V5 (many diffs) n/a
6 TRCN0000479955 TAGACATGATCCAGACCTCCACCC pLX_317 13.9% 86.7% 86.2% V5 (many diffs) n/a
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