Construct: ORF ccsbBroadEn_06863
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000543.1_s300c1, BRDN0000396560
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RGS7 (6000)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 6000 | RGS7 | regulator of G protein sign... | NM_002924.6 | 99.9% | 99.7% | 1227G>T |
2 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001282778.2 | 96.2% | 96% | 1227G>T;1358_1359ins54 |
3 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001364886.1 | 95.5% | 95.1% | (many diffs) |
4 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001282775.2 | 94.6% | 93.8% | (many diffs) |
5 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002004.2 | 92.7% | 92.6% | 174_175ins51;1176G>T;1307_1308ins54 |
6 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002001.2 | 92.1% | 91.7% | (many diffs) |
7 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002003.2 | 91.2% | 90.3% | (many diffs) |
8 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001350115.1 | 90.8% | 90.7% | 0_1ins78;1149G>T;1280_1281ins54 |
9 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001350116.1 | 90.8% | 90.7% | 0_1ins78;1149G>T;1280_1281ins54 |
10 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002009.1 | 90.8% | 90.7% | 0_1ins78;1149G>T;1280_1281ins54 |
11 | human | 6000 | RGS7 | regulator of G protein sign... | XM_006711800.4 | 90.3% | 89.9% | (many diffs) |
12 | human | 6000 | RGS7 | regulator of G protein sign... | XM_011544246.3 | 90.3% | 89.9% | (many diffs) |
13 | human | 6000 | RGS7 | regulator of G protein sign... | XM_011544247.3 | 90.3% | 89.9% | (many diffs) |
14 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002002.2 | 90.3% | 89.9% | (many diffs) |
15 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001350113.1 | 89.3% | 88.5% | (many diffs) |
16 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001350114.1 | 89.3% | 88.5% | (many diffs) |
17 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002005.2 | 89.3% | 88.5% | (many diffs) |
18 | human | 6000 | RGS7 | regulator of G protein sign... | NM_001282773.2 | 83.8% | 82.9% | (many diffs) |
19 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002013.1 | 78.9% | 78.8% | 0_1ins252;975G>T;1106_1107ins54 |
20 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002011.2 | 78.7% | 78.3% | (many diffs) |
21 | human | 6000 | RGS7 | regulator of G protein sign... | XM_017002012.2 | 77.6% | 76.5% | (many diffs) |
22 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_006496830.4 | 90.8% | 97.9% | (many diffs) |
23 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_011238808.3 | 88.3% | 94.9% | (many diffs) |
24 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_030253948.1 | 87.4% | 94.4% | (many diffs) |
25 | mouse | 24012 | Rgs7 | regulator of G protein sign... | NM_011880.3 | 87.3% | 94.4% | (many diffs) |
26 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_006496828.4 | 87% | 93.9% | (many diffs) |
27 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_006496829.4 | 87% | 93.9% | (many diffs) |
28 | mouse | 24012 | Rgs7 | regulator of G protein sign... | NM_001199003.1 | 85.9% | 91.6% | (many diffs) |
29 | mouse | 24012 | Rgs7 | regulator of G protein sign... | NM_001347195.1 | 85.9% | 92.6% | (many diffs) |
30 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_017320465.2 | 83.9% | 90.9% | (many diffs) |
31 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_006496831.4 | 83.8% | 90.5% | (many diffs) |
32 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_030253949.1 | 82.6% | 88.1% | (many diffs) |
33 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_006496834.4 | 77.2% | 83.3% | (many diffs) |
34 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_017320468.2 | 77.2% | 83.5% | (many diffs) |
35 | mouse | 24012 | Rgs7 | regulator of G protein sign... | XM_011238809.3 | 75.9% | 81.7% | (many diffs) |
36 | mouse | 24012 | Rgs7 | regulator of G protein sign... | NM_001357129.1 | 75.9% | 80.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1527
- ORF length:
- 1461
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCAGGGGAAT AATTATGGGC AGACCAGCAA CGGGGTGGCC GATGAATCAC 121 CCAACATGCT GGTGTACAGA AAGATGGAAG ACGTCATAGC ACGGATGCAA GATGAAAAAA 181 ATGGAATTCC TATTCGTACG GTCAAAAGCT TTCTTTCCAA GATACCTAGC GTCTTCTCTG 241 GTTCAGACAT TGTTCAATGG TTGATAAAGA ACTTAACTAT AGAAGATCCA GTGGAGGCGC 301 TCCATTTGGG AACATTAATG GCTGCCCACG GCTACTTCTT TCCAATCTCA GATCATGTCC 361 TCACACTCAA GGATGATGGC ACCTTTTACC GGTTTCAAAC CCCCTATTTT TGGCCATCAA 421 ATTGTTGGGA GCCGGAAAAC ACAGATTATG CCGTTTACCT CTGCAAGAGA ACAATGCAAA 481 ACAAGGCACG ACTGGAGCTC GCAGACTATG AGGCTGAGAG CCTGGCCAGG CTGCAGAGAG 541 CATTTGCCCG GAAGTGGGAG TTCATTTTCA TGCAAGCAGA AGCACAAGCA AAAGTGGACA 601 AGAAGAGAGA CAAGATTGAA AGGAAGATCC TTGACAGCCA AGAGAGAGCG TTCTGGGACG 661 TGCACAGGCC CGTGCCTGGA TGTGTAAATA CAACTGAAGT GGACATTAAG AAGTCATCCA 721 GAATGAGAAA CCCCCACAAA ACACGGAAGT CTGTCTATGG TTTACAAAAT GATATTAGAA 781 GTCACAGTCC TACCCACACA CCCACACCAG AAACTAAACC TCCAACAGAA GATGAGTTAC 841 AACAACAGAT AAAATATTGG CAAATACAGT TAGATAGACA TCGGTTAAAA ATGTCAAAAG 901 TCGCTGACAG TCTACTAAGT TACACGGAAC AGTATTTAGA ATACGACCCG TTTCTTTTGC 961 CACCTGACCC TTCTAACCCA TGGCTGTCCG ATGACACCAC TTTCTGGGAA CTTGAGGCAA 1021 GCAAAGAACC GAGCCAGCAG AGGGTAAAAC GATGGGGTTT TGGCATGGAC GAGGCATTGA 1081 AAGACCCAGT TGGGAGAGAA CAGTTCCTTA AATTTCTAGA GTCAGAATTC AGCTCGGAAA 1141 ATTTAAGATT CTGGCTGGCA GTGGAGGACC TGAAAAAGAG GCCTATTAAA GAAGTACCCT 1201 CAAGAGTTCA GGAAATATGG CAAGAGTTTC TGGCTCCCGG AGCCCCCAGT GCTATTAACT 1261 TGGATTCCAA GAGTTATGAC AAAACCACAC ATAACGTGAA GGAACCTGGA CGATACACAT 1321 TTGAAGATGC TCAGGAGCAC ATTTACAAAC TGATGAAAAG TGATTCATAC CCACGTTTTA 1381 TAAGATCCAG TGCCTATCAG GAGCTTCTAC AGGCAAAGAA AAAGTCTGGA AACTCAATGG 1441 ATCGCAGAAC ATCTTTTGAA AAATTTGCAC AGAATGTGGG GAAATCTCTC ACGTCCAAGA 1501 GGTTAACAAG CCTTGCTCAG TCTTACTACC CAACTTTCTT GTACAAAGTt ggcattataa 1561 gaaagcattg cttatcaatt tgttgcaacg aac