Construct: ORF ccsbBroadEn_06975
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004414.1_s300c1, BRDN0000387380
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMARCC2 (6601)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | NM_139067.4 | 99.9% | 99.9% | 2721G>T |
| 2 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_017019884.1 | 99.8% | 99.8% | 1742_1743insGCA;2718G>T |
| 3 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | NM_001130420.3 | 98% | 98% | 2721G>T;3316_3381del |
| 4 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_005269104.1 | 97.9% | 97.9% | 1742_1743insGCA;2718G>T;3313_3378del |
| 5 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_017019886.1 | 97.2% | 97.1% | 1649_1650ins93;2628G>T |
| 6 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_017019885.1 | 95.3% | 95.3% | 1649_1650ins93;2628G>T;3223_3288del |
| 7 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | NM_001330288.2 | 90.7% | 90.6% | 2721G>T;3316_3660del |
| 8 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_005269102.2 | 90.6% | 90.6% | 1742_1743insGCA;2718G>T;3313_3657del |
| 9 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | NM_003075.5 | 88.2% | 88.1% | 1649_1650ins93;2628G>T;3223_3567del |
| 10 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_005269103.2 | 88.1% | 88.1% | 1647_1648ins96;2625G>T;3220_3564del |
| 11 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_011538693.3 | 70.5% | 70.5% | 0_1ins753;1968G>T;2563_2907del |
| 12 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XM_017019887.2 | 68% | 68% | (many diffs) |
| 13 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XR_002957374.1 | 64.7% | (many diffs) | |
| 14 | human | 6601 | SMARCC2 | SWI/SNF related, matrix ass... | XR_002957373.1 | 61.2% | (many diffs) | |
| 15 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | NM_001114096.1 | 90.5% | 96.7% | (many diffs) |
| 16 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | XM_006514023.3 | 88.7% | 94.8% | (many diffs) |
| 17 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | XM_006514024.3 | 88.6% | 94.7% | (many diffs) |
| 18 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | NM_198160.2 | 87.8% | 93.9% | (many diffs) |
| 19 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | XM_006514020.3 | 82.2% | 87.8% | (many diffs) |
| 20 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | XM_006514021.3 | 82.1% | 87.7% | (many diffs) |
| 21 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | NM_001114097.1 | 79.7% | 85.3% | (many diffs) |
| 22 | mouse | 68094 | Smarcc2 | SWI/SNF related, matrix ass... | XM_006514022.3 | 79.7% | 85.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3456
- ORF length:
- 3390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTGCGGAAG AAGGACGGCG GCCCCAACGT GAAGTACTAC GAGGCCGCGG 121 ACACCGTGAC CCAGTTCGAC AACGTGCGGC TGTGGCTCGG CAAGAACTAC AAGAAGTATA 181 TACAAGCTGA ACCACCCACC AACAAGTCCC TGTCTAGCCT GGTTGTACAG TTGCTACAAT 241 TTCAGGAAGA AGTTTTTGGC AAACATGTCA GCAATGCACC GCTCACTAAA CTGCCGATCA 301 AATGTTTCCT AGATTTCAAA GCGGGAGGCT CCTTGTGCCA CATTCTTGCA GCTGCCTACA 361 AATTCAAGAG TGACCAGGGA TGGCGGCGTT ACGATTTCCA GAATCCATCA CGCATGGACC 421 GCAATGTGGA AATGTTTATG ACCATTGAGA AGTCCTTGGT GCAGAATAAT TGCCTGTCTC 481 GACCTAACAT TTTTCTGTGC CCAGAAATTG AGCCCAAACT ACTAGGGAAA TTAAAGGACA 541 TTATCAAGAG ACACCAGGGA ACAGTCACTG AGGATAAGAA CAATGCCTCC CATGTTGTGT 601 ATCCTGTCCC GGGGAATCTA GAAGAAGAGG AATGGGTACG ACCAGTCATG AAGAGGGATA 661 AGCAGGTTCT TCTGCACTGG GGCTACTATC CTGACAGTTA CGACACGTGG ATCCCAGCGA 721 GTGAAATTGA GGCATCTGTG GAAGATGCTC CAACTCCTGA GAAACCTAGG AAGGTTCATG 781 CAAAGTGGAT CCTGGACACC GACACCTTCA ATGAATGGAT GAATGAGGAA GACTATGAAG 841 TAAATGATGA CAAAAACCCT GTCTCCCGCC GAAAGAAGAT TTCAGCCAAG ACACTGACAG 901 ATGAGGTGAA CAGCCCAGAT TCAGATCGAC GGGACAAGAA GGGGGGAAAC TATAAGAAGA 961 GGAAGCGCTC CCCCTCTCCT TCACCAACCC CAGAAGCAAA GAAGAAAAAT GCTAAGAAAG 1021 GTCCCTCAAC ACCTTACACT AAGTCAAAGC GTGGCCACAG AGAAGAGGAG CAAGAAGACC 1081 TGACAAAGGA CATGGACGAG CCCTCACCAG TCCCCAATGT AGAAGAGGTG ACACTTCCCA 1141 AAACAGTCAA CACAAAGAAA GACTCAGAGT CGGCCCCAGT CAAAGGCGGC ACCATGACCG 1201 ACCTGGATGA ACAGGAAGAT GAAAGCATGG AGACGACGGG CAAGGATGAG GATGAGAACA 1261 GTACGGGGAA CAAGGGAGAG CAGACCAAGA ATCCAGACCT GCATGAGGAC AATGTGACTG 1321 AACAGACCCA CCACATCATC ATTCCCAGCT ACGCTGCCTG GTTTGACTAC AATAGTGTTC 1381 ATGCCATTGA GCGGAGGGCT CTCCCCGAGT TCTTCAACGG CAAGAACAAG TCCAAGACTC 1441 CAGAGATCTA CCTGGCCTAT CGAAACTTTA TGATTGACAC TTACCGACTG AACCCCCAAG 1501 AGTATCTTAC CTCTACCGCC TGCCGCCGAA ACCTAGCGGG TGATGTCTGT GCCATCATGA 1561 GGGTCCATGC CTTCCTAGAA CAGTGGGGTC TTATTAACTA CCAGGTGGAT GCTGAGAGTC 1621 GACCAACCCC AATGGGGCCT CCGCCTACCT CTCACTTCCA TGTCTTGGCT GACACACCAT 1681 CAGGGCTGGT GCCTCTGCAG CCCAAGACAC CTCAGGGCCG CCAGGTTGAT GCTGATACCA 1741 AGGCTGGGCG AAAGGGCAAA GAGCTGGATG ACCTGGTGCC AGAGACGGCT AAGGGCAAGC 1801 CAGAGCTGCA GACCTCTGCT TCCCAACAAA TGCTCAACTT TCCTGACAAA GGCAAAGAGA 1861 AACCAACAGA CATGCAAAAC TTTGGGCTGC GCACAGACAT GTACACAAAA AAGAATGTTC 1921 CCTCCAAGAG CAAGGCTGCA GCCAGTGCCA CTCGTGAGTG GACAGAACAG GAAACCCTGC 1981 TTCTCCTGGA GGCACTGGAA ATGTACAAAG ATGACTGGAA CAAAGTGTCC GAGCATGTGG 2041 GAAGCCGCAC ACAGGACGAG TGCATCTTGC ATTTTCTTCG TCTTCCCATT GAAGACCCAT 2101 ACCTGGAGGA CTCAGAGGCC TCCCTAGGCC CCCTGGCCTA CCAACCCATC CCCTTCAGTC 2161 AGTCGGGCAA CCCTGTTATG AGCACTGTTG CCTTCCTGGC CTCTGTCGTC GATCCCCGAG 2221 TCGCCTCTGC TGCTGCAAAG TCAGCCCTAG AGGAGTTCTC CAAAATGAAG GAAGAGGTAC 2281 CCACGGCCTT GGTGGAGGCC CATGTTCGAA AAGTGGAAGA AGCAGCCAAA GTAACAGGCA 2341 AGGCGGACCC TGCCTTCGGT CTGGAAAGCA GTGGCATTGC AGGAACCACC TCTGATGAGC 2401 CTGAGCGGAT TGAGGAGAGC GGGAATGACG AGGCTCGGGT GGAAGGCCAG GCCACAGATG 2461 AGAAGAAGGA GCCCAAGGAA CCCCGAGAAG GAGGGGGTGC TATAGAGGAG GAAGCAAAAG 2521 AGAAAACCAG CGAGGCTCCC AAGAAGGATG AGGAGAAAGG GAAAGAAGGC GACAGTGAGA 2581 AGGAGTCCGA GAAGAGTGAT GGAGACCCAA TAGTCGATCC TGAGAAGGAG AAGGAGCCAA 2641 AGGAAGGGCA GGAGGAAGTG CTGAAGGAAG TGGTGGAGTC TGAGGGGGAA AGGAAGACAA 2701 AGGTGGAGCG GGACATTGGC GAGGGCAACC TCTCCACCGC TGCTGCCGCC GCCCTGGCCG 2761 CCGCCGCAGT GAAAGCTAAG CACTTTGCTG CTGTTGAGGA AAGGAAGATC AAATCTTTGG 2821 TGGCCCTGCT GGTGGAGACC CAGATGAAAA AGTTGGAGAT CAAACTTCGG CACTTTGAGG 2881 AGCTGGAGAC TATCATGGAC CGGGAGCGAG AAGCACTGGA GTATCAGAGG CAGCAGCTCC 2941 TGGCCGACAG ACAAGCCTTC CACATGGAGC AGCTGAAGTA TGCGGAGATG AGGGCTCGGC 3001 AGCAGCACTT CCAACAGATG CACCAACAGC AGCAGCAGCC ACCACCAGCC CTGCCCCCAG 3061 GCTCCCAGCC TATCCCCCCA ACAGGGGCTG CTGGGCCACC CGCAGTCCAT GGCTTGGCTG 3121 TGGCTCCAGC CTCTGTAGTC CCTGCTCCTG CTGGCAGTGG GGCCCCTCCA GGAAGTTTGG 3181 GCCCTTCTGA ACAGATTGGG CAGGCAGGGT CAACTGCAGG GCCACAGCAG CAGCAACCAG 3241 CTGGAGCCCC CCAGCCTGGG GCAGTCCCAC CAGGGGTTCC CCCCCCTGGA CCCCATGGCC 3301 CCTCACCGTT CCCCAACCAA CAAACTCCTC CCTCAATGAT GCCAGGGGCA GTGCCAGGCA 3361 GCGGGCACCC AGGCGTGGCG GACCCAGGCA CCCCCCTGCC TCCAGACCCC ACAGCCCCGA 3421 GCCCAGGCAC GGTCACCCCT GTGCCACCTC CACAGTGCCC AACTTTCTTG TACAAAGTtg 3481 gcattataag aaagcattgc ttatcaattt gttgcaacga ac