Transcript: Human XM_011538693.3

PREDICTED: Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 (SMARCC2), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SMARCC2 (6601)
Length:
4024
CDS:
696..3680

Additional Resources:

NCBI RefSeq record:
XM_011538693.3
NBCI Gene record:
SMARCC2 (6601)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011538693.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000329885 GCCTGTCTCGACCTAACATTT pLKO_005 419 5UTR 100% 13.200 18.480 N SMARCC2 n/a
2 TRCN0000329883 TCACTAAACTGCCGATCAAAT pLKO_005 230 5UTR 100% 13.200 18.480 N SMARCC2 n/a
3 TRCN0000015699 CCCAAGAGTATCTTACCTCTA pLKO.1 1372 CDS 100% 4.050 5.670 N SMARCC2 n/a
4 TRCN0000015702 CGCAGTGAAAGCTAAGCACTT pLKO.1 2642 CDS 100% 4.050 5.670 N SMARCC2 n/a
5 TRCN0000015701 CCAAACTACTAGGGAAATTAA pLKO.1 461 5UTR 100% 15.000 10.500 N SMARCC2 n/a
6 TRCN0000329881 CCAAACTACTAGGGAAATTAA pLKO_005 461 5UTR 100% 15.000 10.500 N SMARCC2 n/a
7 TRCN0000433947 GTGGATCCCAGCGAGTGAAAT pLKO_005 584 5UTR 100% 13.200 9.240 N Smarcc2 n/a
8 TRCN0000329808 CCCAACAAATGCTCAACTTTC pLKO_005 1699 CDS 100% 10.800 7.560 N SMARCC2 n/a
9 TRCN0000015698 GCCTAACAGAGGCATGCATTT pLKO.1 3830 3UTR 100% 10.800 7.560 N SMARCC2 n/a
10 TRCN0000329882 GCCTAACAGAGGCATGCATTT pLKO_005 3830 3UTR 100% 10.800 7.560 N SMARCC2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011538693.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06975 pDONR223 100% 70.5% 70.5% None 0_1ins753;1968G>T;2563_2907del n/a
2 ccsbBroad304_06975 pLX_304 0% 70.5% 70.5% V5 0_1ins753;1968G>T;2563_2907del n/a
3 TRCN0000468652 TGATTTGTTTCGGCTACAATTTTA pLX_317 11.5% 70.5% 70.5% V5 0_1ins753;1968G>T;2563_2907del n/a
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