Construct: ORF ccsbBroadEn_07096

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002229.1_s300c1, BRDN0000393731
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPTE (7179)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7179 TPTE transmembrane phosphatase w... NM_199259.3 99.9% 99.8% 1355T>C
2 human 7179 TPTE transmembrane phosphatase w... NM_199261.3 96.6% 96.5% 115_168del;1409T>C
3 human 7179 TPTE transmembrane phosphatase w... NM_199260.3 96.1% 96% 119_120ins60;1295T>C
4 human 93492 TPTE2 transmembrane phosphoinosit... NM_199254.2 89.5% 83.1% (many diffs)
5 human 93492 TPTE2 transmembrane phosphoinosit... NM_130785.3 77.4% 70.1% (many diffs)
6 human 7179 TPTE transmembrane phosphatase w... NM_001290224.1 77.4% 77.2% 0_1ins360;995T>C
7 human 93492 TPTE2 transmembrane phosphoinosit... NM_001141968.1 69.3% 63.2% (many diffs)
8 human 93492 TPTE2 transmembrane phosphoinosit... NR_073485.1 67.1% (many diffs)
9 human 93492 TPTE2 transmembrane phosphoinosit... NR_073486.1 60.9% (many diffs)
10 human 93492 TPTE2 transmembrane phosphoinosit... NR_073487.1 55.7% (many diffs)
11 human 644623 TPTE2P2 transmembrane phosphoinosit... XR_001749878.2 52.8% (many diffs)
12 human 220115 TPTE2P3 transmembrane phosphoinosit... NR_002793.1 48.6% (many diffs)
13 human 93492 TPTE2 transmembrane phosphoinosit... NM_001271850.1 33% 28.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TGAAAGTCCT GATCCGACTG ACCTGGCGGG AGTCATCATT GAGCTCGGCC
121CCAATGACAG TCCACAGACA AGTGAATTTA AAGGAGCAAC CGAGGAGGCA CCTGCGAAAG
181AAAGTGTGTT AGCACGACTT TCCAAGTTTG AAGTTGAAGA TGCTGAAAAT GTTGCTTCAT
241ATGACAGCAA GATTAAGAAA ATTGTGCATT CAATTGTATC ATCCTTTGCA TTTGGACTAT
301TTGGAGTTTT CCTGGTCTTA CTGGATGTCA CTCTCATCCT TGCCGACCTA ATTTTCACTG
361ACAGCAAACT TTATATTCCT TTGGAGTATC GTTCTATTTC TCTAGCTATT GCCTTATTTT
421TTCTCATGGA TGTTCTTCTT CGAGTATTTG TAGAAAGGAG ACAGCAGTAT TTTTCTGACT
481TATTTAACAT TTTAGATACT GCCATTATTG TGATTCTTCT GCTGGTTGAT GTCGTTTACA
541TTTTTTTTGA CATTAAGTTG CTTAGGAATA TTCCCAGATG GACACATTTA CTTCGACTTC
601TACGACTTAT TATTCTGTTA AGAATTTTTC ATCTGTTTCA TCAAAAAAGA CAACTTGAAA
661AGCTGATAAG AAGGCGGGTT TCAGAAAACA AAAGGCGATA CACAAGGGAT GGATTTGACC
721TAGACCTCAC TTACGTTACA GAACGTATTA TTGCTATGTC ATTTCCATCT TCTGGAAGGC
781AGTCTTTCTA TAGAAATCCA ATCAAGGAAG TTGTGCGGTT TCTAGATAAG AAACACCGAA
841ACCACTATCG AGTCTACAAT CTATGCAGTG AAAGAGCTTA CGATCCTAAG CACTTCCATA
901ATAGGGTCGT TAGAATCATG ATTGATGATC ATAATGTCCC CACTCTACAT CAGATGGTGG
961TTTTCACCAA GGAAGTAAAT GAGTGGATGG CTCAAGATCT TGAAAACATC GTAGCGATTC
1021ACTGTAAAGG AGGCACAGAT AGAACAGGAA CTATGGTTTG TGCCTTCCTT ATTGCCTCTG
1081AAATATGTTC AACTGCAAAG GAAAGCCTGT ATTATTTTGG AGAAAGGCGA ACAGATAAAA
1141CCCACAGCGA AAAATTTCAG GGAGTAGAAA CTCCTTCTCA GAAGAGATAT GTTGCATATT
1201TTGCACAAGT GAAACATCTC TACAACTGGA ATCTCCCTCC AAGACGGATA CTCTTTATAA
1261AACACTTCAT TATTTATTCG ATTCCTCGTT ATGTACGTGA TCTAAAAATC CAAATAGAAA
1321TGGAGAAAAA GGTTGTCTTT TCCACTATTT CATTAGGAAA ATGTTCGGTA CTTGATAACA
1381TTACAACAGA CAAAATATTA ATTGATGTAT TCGACGGTCC ACCTCTGTAT GATGATGTGA
1441AAGTGCAGTT TTTCTATTCG AATCTTCCTA CATACTATGA CAATTGCTCA TTTTACTTCT
1501GGTTGCACAC ATCTTTTATT GAAAATAACA GGCTTTATCT ACCAAAAAAT GAATTGGATA
1561ATCTACATAA ACAAAAAGCA CGGAGAATTT ATCCATCAGA TTTTGCCGTG GAGATACTTT
1621TTGGCGAGAA AATGACTTCC AGTGATGTTG TAGCTGGATC CGATTACCCA ACTTTCTTGT
1681ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)