Construct: ORF ccsbBroadEn_07170
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013111.1_s300c1, BRDN0000386597
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF184 (7738)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7738 | ZNF184 | zinc finger protein 184 | NM_001318891.1 | 99.9% | 99.8% | 79G>T |
| 2 | human | 7738 | ZNF184 | zinc finger protein 184 | NM_001318892.1 | 99.9% | 99.8% | 79G>T |
| 3 | human | 7738 | ZNF184 | zinc finger protein 184 | NM_007149.2 | 99.9% | 99.8% | 79G>T |
| 4 | human | 7738 | ZNF184 | zinc finger protein 184 | NM_001318893.2 | 87.4% | 87.4% | 0_1ins257;40_68del |
| 5 | human | 7738 | ZNF184 | zinc finger protein 184 | NM_001347832.2 | 87.4% | 87.4% | 0_1ins257;40_68del |
| 6 | mouse | 193452 | Zfp184 | zinc finger protein 184 (Kr... | NM_183014.1 | 81.9% | 81.3% | (many diffs) |
| 7 | mouse | 193452 | Zfp184 | zinc finger protein 184 (Kr... | XM_006516596.3 | 81.9% | 81.3% | (many diffs) |
| 8 | mouse | 193452 | Zfp184 | zinc finger protein 184 (Kr... | XM_006516597.3 | 81.9% | 81.3% | (many diffs) |
| 9 | mouse | 193452 | Zfp184 | zinc finger protein 184 (Kr... | XM_006516598.3 | 73.7% | 73.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2319
- ORF length:
- 2253
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGATCTGTCC TCTCCAGACT CCACCCTTCT CCAAGGGGGA CATAATCTAC 121 TCTCATCAGC CAGTTTTCAG GAATCGGTGA CTTTCAAGGA TGTGATAGTG GACTTTACCC 181 AGGAAGAATG GAAACAGCTG GACCCTGGCC AGAGAGATTT GTTCAGGGAT GTGACATTGG 241 AAAATTATAC ACACCTGGTC TCTATAGGAC TCCAAGTTTC TAAACCTGAT GTGATTTCCC 301 AGTTAGAGCA AGGGACAGAG CCATGGATCA TGGAGCCAAG CATTCCAGTA GGTACCTGTG 361 CAGACTGGGA GACAAGACTT GAAAATAGTG TGTCAGCCCC AGAGCCTGAC ATTTCTGAAG 421 AAGAGCTATC TCCAGAGGTA ATAGTGGAAA AACACAAAAG AGATGATTCT TGGAGTTCCA 481 ACTTGCTAGA AAGTTGGGAA TATGAAGGCA GTTTAGAGAG ACAGCAGGCA AACCAACAGA 541 CACTGCCAAA GGAAATAAAG GTAACCGAAA AGACAATACC CAGTTGGGAA AAAGGCCCTG 601 TAAATAATGA ATTTGGGAAA AGTGTCAATG TGAGTTCAAA CCTTGTAACA CAAGAACCAT 661 CTCCAGAAGA GACCTCTACT AAAAGAAGCA TCAAACAGAA TTCAAACCCA GTTAAAAAAG 721 AGAAATCTTG TAAGTGCAAT GAATGTGGGA AAGCCTTTAG TTATTGTTCA GCTCTTATTC 781 GCCATCAGAG AACACATACT GGAGAAAAAC CCTACAAATG TAATGAATGT GAAAAAGCCT 841 TCAGCCGGAG TGAAAACCTT ATAAACCATC AAAGAATTCA TACTGGAGAT AAACCATATA 901 AATGTGATCA GTGTGGAAAA GGCTTCATTG AGGGTCCATC TCTTACTCAA CATCAAAGAA 961 TTCATACTGG AGAAAAACCA TATAAATGTG ATGAATGTGG GAAAGCCTTT AGTCAGAGGA 1021 CCCATCTTGT TCAGCATCAG AGAATTCATA CTGGCGAGAA GCCATACACT TGTAATGAGT 1081 GTGGAAAAGC CTTTAGCCAG AGAGGCCACT TTATGGAACA TCAGAAAATT CATACGGGAG 1141 AAAAACCTTT TAAATGTGAT GAATGTGATA AAACCTTCAC CAGGAGCACA CACCTTACTC 1201 AACATCAAAA AATTCATACT GGAGAAAAAA CCTATAAATG TAATGAATGT GGAAAGGCCT 1261 TCAACGGGCC CTCAACTTTT ATCCGTCATC ATATGATTCA TACTGGTGAA AAACCGTACG 1321 AATGCAATGA ATGTGGGAAA GCCTTCAGCC AGCACTCAAA CCTCACTCAG CATCAAAAAA 1381 CTCATACTGG GGAGAAACCC TATGATTGTG CAGAATGTGG AAAATCTTTT AGTTACTGGT 1441 CATCCCTTGC TCAACACCTG AAAATTCATA CTGGAGAAAA ACCTTACAAA TGCAATGAAT 1501 GTGGAAAGGC CTTCAGTTAC TGCTCATCCC TTACTCAACA TCGGAGAATT CACACGAGAG 1561 AAAAGCCCTT TGAATGCAGT GAATGTGGAA AGGCTTTCAG TTATCTCTCA AACCTTAATC 1621 AGCATCAGAA AACTCATACT CAAGAGAAAG CTTATGAATG TAAAGAATGT GGGAAAGCTT 1681 TTATTCGGAG TTCATCTCTT GCTAAGCATG AAAGAATTCA TACTGGAGAG AAACCCTATC 1741 AGTGTCATGA ATGTGGGAAA ACCTTCAGTT ATGGTTCATC CCTTATTCAG CATAGGAAGA 1801 TCCATACTGG AGAACGACCT TACAAGTGTA ATGAGTGTGG GAGAGCATTC AACCAGAACA 1861 TACACCTTAC ACAGCATAAG AGAATTCATA CAGGAGCCAA GCCTTATGAG TGTGCTGAGT 1921 GTGGTAAAGC CTTTCGACAT TGTTCATCTC TTGCTCAACA TCAAAAAACT CACACAGAAG 1981 AAAAACCCTA CCAGTGTAAT AAATGTGAAA AGACCTTTAG CCAGAGCTCC CATCTAACTC 2041 AGCATCAACG AATTCACACT GGGGAGAAGC CCTATAAGTG CAATGAATGT GACAAAGCCT 2101 TTAGCCGGAG CACTCATCTG ACTGAACATC AGAATACTCA TACTGGAGAG AAACCTTATA 2161 ACTGTAATGA ATGCAGAAAG ACTTTTAGCC AGAGCACATA TCTCATTCAG CACCAGAGAA 2221 TTCATTCAGG AGAGAAGCCT TTTGGATGTA ATGATTGTGG AAAATCCTTC AGATATCGCT 2281 CTGCTCTCAA CAAACATCAG AGACTGCATC CTGGCATATG TCCAACTTTC TTGTACAAAG 2341 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac