Transcript: Mouse XM_006516597.3

PREDICTED: Mus musculus zinc finger protein 184 (Kruppel-like) (Zfp184), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp184 (193452)
Length:
3083
CDS:
720..2933

Additional Resources:

NCBI RefSeq record:
XM_006516597.3
NBCI Gene record:
Zfp184 (193452)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006516597.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096392 CATCTCTTGCTCAACATCAAA pLKO.1 2536 CDS 100% 5.625 3.938 N Zfp184 n/a
2 TRCN0000096391 CCCTACTCCTACCATCTAGTT pLKO.1 769 CDS 100% 4.950 3.465 N Zfp184 n/a
3 TRCN0000096390 CCTGATATGATTTCCCAACTA pLKO.1 939 CDS 100% 4.950 3.465 N Zfp184 n/a
4 TRCN0000107999 TCGGAGTTCATCTCTTGCTAA pLKO.1 2276 CDS 100% 4.950 3.465 N ZNF184 n/a
5 TRCN0000096389 TATAGAAATGAATCAGAGTGG pLKO.1 2955 3UTR 100% 2.160 1.512 N Zfp184 n/a
6 TRCN0000096393 CTAGAACTTGACATTTCTGAA pLKO.1 1053 CDS 100% 4.950 2.970 N Zfp184 n/a
7 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1389 CDS 100% 15.000 7.500 Y ZNF443 n/a
8 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1389 CDS 100% 15.000 7.500 Y Zfp97 n/a
9 TRCN0000147970 GAATGTAAGGAATGTGGGAAA pLKO.1 2247 CDS 100% 4.050 2.025 Y ZNF700 n/a
10 TRCN0000160334 CCTATGAATGTAAGGAATGTA pLKO.1 2242 CDS 100% 5.625 2.813 Y ZNF570 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006516597.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07170 pDONR223 100% 81.9% 81.3% None (many diffs) n/a
2 ccsbBroad304_07170 pLX_304 0% 81.9% 81.3% V5 (many diffs) n/a
3 TRCN0000467767 CTATGTTCATAGCTAACTCCGTAC pLX_317 20.3% 81.9% 81.3% V5 (many diffs) n/a
Download CSV