Construct: ORF ccsbBroadEn_07368

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005656.1_s300c1, BRDN0000394369
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC28A1 (9154)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9154 SLC28A1 solute carrier family 28 me... NM_001287762.2 99.8% 99.8% 1149G>A;1368A>G;1528C>T
2 human 9154 SLC28A1 solute carrier family 28 me... NM_004213.5 99.8% 99.8% 1149G>A;1368A>G;1528C>T
3 human 9154 SLC28A1 solute carrier family 28 me... NM_001321722.2 97% 95.8% (many diffs)
4 human 9154 SLC28A1 solute carrier family 28 me... XM_017022723.1 96.9% 95.9% (many diffs)
5 human 9154 SLC28A1 solute carrier family 28 me... XM_011522210.2 96.2% 95.4% (many diffs)
6 human 9154 SLC28A1 solute carrier family 28 me... XM_011522203.2 92.2% 89.4% (many diffs)
7 human 9154 SLC28A1 solute carrier family 28 me... XM_011522204.3 92.2% 89.4% (many diffs)
8 human 9154 SLC28A1 solute carrier family 28 me... XM_011522205.3 92.2% 89.4% (many diffs)
9 human 9154 SLC28A1 solute carrier family 28 me... XM_011522206.3 92.2% 89.4% (many diffs)
10 human 9154 SLC28A1 solute carrier family 28 me... XM_024450099.1 92.2% 89.4% (many diffs)
11 human 9154 SLC28A1 solute carrier family 28 me... XM_011522209.2 88.4% 85.7% (many diffs)
12 human 9154 SLC28A1 solute carrier family 28 me... XM_024450100.1 88.4% 85.7% (many diffs)
13 human 9154 SLC28A1 solute carrier family 28 me... XM_024450101.1 88.4% 85.7% (many diffs)
14 human 9154 SLC28A1 solute carrier family 28 me... XM_011522208.3 85.4% 81.1% (many diffs)
15 human 9154 SLC28A1 solute carrier family 28 me... XM_011522212.1 83.1% 81.9% (many diffs)
16 human 9154 SLC28A1 solute carrier family 28 me... NM_001321721.2 82.9% 81.5% (many diffs)
17 human 9154 SLC28A1 solute carrier family 28 me... XM_011522214.2 82.1% 81.5% (many diffs)
18 human 9154 SLC28A1 solute carrier family 28 me... XM_011522211.3 81% 78.3% (many diffs)
19 human 9154 SLC28A1 solute carrier family 28 me... XM_011522216.2 81% 78.3% (many diffs)
20 human 9154 SLC28A1 solute carrier family 28 me... NM_001287761.1 74.4% 74.4% 1083_1084ins498
21 human 9154 SLC28A1 solute carrier family 28 me... XM_011522217.1 74.4% 74.4% 1083_1084ins498
22 human 9154 SLC28A1 solute carrier family 28 me... XR_931944.2 72.7% (many diffs)
23 human 9154 SLC28A1 solute carrier family 28 me... XM_011522215.2 68.4% 65.9% (many diffs)
24 human 9154 SLC28A1 solute carrier family 28 me... XR_002957690.1 56.5% (many diffs)
25 human 9154 SLC28A1 solute carrier family 28 me... XM_011522218.2 55.7% 55.6% (many diffs)
26 human 9154 SLC28A1 solute carrier family 28 me... XR_931945.2 53.6% (many diffs)
27 human 9154 SLC28A1 solute carrier family 28 me... XM_024450102.1 40.8% 38.5% (many diffs)
28 human 9154 SLC28A1 solute carrier family 28 me... NM_201651.3 26.2% 23.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2016
ORF length:
1947
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGAACGAC CCCTCGAGAC GAAGAGAGTC CATCTCTCTC ACACCTGTGG
121CCAAGGGTCT GGAGAACATG GGGGCTGATT TCTTGGAAAG CCTGGAGGAA GGCCAGCTCC
181CTAGGAGTGA CTTGAGCCCC GCAGAGATCA GGAGCAGCTG GAGCGAGGCG GCGCCGAAGC
241CCTTCTCCAG ATGGAGGAAC CTGCAGCCAG CCCTGAGAGC CAGAAGCTTC TGCAGGGAGC
301ACATGCAGCT GTTTCGATGG ATCGGCACAG GCCTGCTCTG CACTGGGCTC TCTGCCTTCC
361TGCTGGTGGC CTGCCTCCTG GATTTCCAGA GGGCCCTGGC TCTGTTTGTC CTCACCTGTG
421TGGTCCTCAC CTTCCTGGGC CACCGCCTGC TGAAACGGCT TCTGGGGCCA AAGCTGAGGA
481GGTTTCTCAA GCCTCAGGGC CATCCCCGCC TGCTGCTCTG GTTTAAGAGG GGTCTAGCTC
541TTGCTGCTTT CCTGGGCCTG GTCCTGTGGC TGTCTCTGGA CACCTCCCAG CGGCCTGAGC
601AACTGGTGTC CTTCGCAGGA ATCTGCGTGT TCGTCGCTCT CCTCTTTGCC TGCTCAAAGC
661ATCATTGCGC AGTGTCCTGG AGGGCCGTGT CTTGGGGACT TGGACTGCAG TTTGTACTTG
721GACTCCTCGT CATCAGAACA GAACCAGGAT TCATTGCGTT CGAGTGGCTG GGCGAGCAGA
781TCCGGATCTT CCTGAGCTAC ACGAAGGCTG GCTCCAGCTT CGTGTTTGGG GAGGCGCTGG
841TCAAGGATGT CTTTGCCTTT CAGGTTCTGC CCATCATTGT CTTTTTCAGC TGTGTCATAT
901CCGTTCTCTA CCACGTGGGC CTCATGCAGT GGGTGATCCT GAAGATTGCC TGGCTGATGC
961AAGTCACCAT GGGCACCACA GCCACTGAGA CCCTGAGTGT GGCTGGAAAC ATCTTTGTGA
1021GCCAGACCGA GGCTCCATTA CTGATCCGGC CCTACTTGGC AGACATGACA CTCTCTGAAG
1081TCCACGTTGT CATGACCGGA GGTTACGCCA CCATTGCTGG CAGCCTGCTG GGTGCCTACA
1141TCTCCTTTGG GATCGATGCC ACCTCGTTGA TTGCAGCCTC TGTGATGGCT GCCCCTTGTG
1201CCTTGGCCCT CTCCAAACTG GTCTACCCGG AGGTGGAGGA GTCCAAGTTT AGGAGGGAGG
1261AAGGAGTGAA ACTGACCTAT GGAGATGCTC AGAACCTCAT AGAAGCAGCC AGCACTGGGG
1321CCGCCATCTC CGTGAAGGTG GTCGCCAACA TCGCTGCCAA CCTGATTGCG TTCCTGGCTG
1381TGCTGGACTT TATCAATGCT GCCCTCTCCT GGCTGGGAGA CATGGTGGAC ATCCAGGGGC
1441TCAGCTTCCA GCTCATCTGC TCCTACATCC TGCGGCCTGT AGCCTTCTTG ATGGGTGTGG
1501CGTGGGAGGA CTGCCCAGTG GTAGCTGAGC TGCTGGGGAT CAAGCTGTTT CTGAACGAGT
1561TTGTGGCCTA TCAAGACCTC TCCAAGTACA AGCAATGCCG CCTGGCAGGG GCCGAGGAGT
1621GGGTCGGCGA CAGGAAGCAG TGGATCTCCG TCAGAGCTGA AGTCCTCACG ACGTTTGCCC
1681TCTGTGGATT TGCCAATTTC AGCTCCATTG GGATCATGCT GGGAGGCTTG ACCTCCATGG
1741TCCCCCAACG GAAGAGCGAC TTCTCCCAGA TAGTGCTCCG GGCGCTCTTC ACGGGAGCCT
1801GTGTGTCCCT GGTGAACGCC TGTATGGCAG GGATCCTCTA CATGCCCAGG GGGGCTGAAG
1861TTGACTGCAT GTCCCTCTTG AACACGACCC TCAGCAGCAG TAGCTTTGAG ATTTACCAGT
1921GCTGCCGTGA GGCCTTCCAG AGCGTCAATC CAGAGTTCAG CCCAGAGGCC CTGGACAACT
1981GCTGTCGGTT TTACAACCAC ACGATCTGTG CACAGTTGCC AACTTTCTTG TACAAAGTtg
2041gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)