Construct: ORF ccsbBroadEn_07736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004513.1_s300c1, BRDN0000385183
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZPBP (11055)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11055 | ZPBP | zona pellucida binding protein | NM_007009.3 | 99.8% | 99.7% | 12C>T;1048T>A |
| 2 | human | 11055 | ZPBP | zona pellucida binding protein | NM_001159878.2 | 99.5% | 99.4% | 12C>T;332_333insAGT;1045T>A |
| 3 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515095.2 | 90.5% | 81.3% | (many diffs) |
| 4 | human | 11055 | ZPBP | zona pellucida binding protein | XM_017011707.1 | 90.4% | 82.1% | (many diffs) |
| 5 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515096.2 | 90.2% | 81.1% | (many diffs) |
| 6 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515097.1 | 88.7% | 83.2% | (many diffs) |
| 7 | human | 11055 | ZPBP | zona pellucida binding protein | XM_024446645.1 | 85.2% | 85.1% | 12C>T;333_334ins153;895T>A |
| 8 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515100.2 | 79.4% | 70.7% | (many diffs) |
| 9 | human | 11055 | ZPBP | zona pellucida binding protein | XM_024446646.1 | 78.5% | 78.3% | 0_1ins222;110_111insAGT;823T>A |
| 10 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515101.3 | 77% | 68.5% | (many diffs) |
| 11 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515103.1 | 74.2% | 74.3% | 12C>T;783_784ins270 |
| 12 | human | 11055 | ZPBP | zona pellucida binding protein | XR_001744543.1 | 73.6% | (many diffs) | |
| 13 | human | 11055 | ZPBP | zona pellucida binding protein | XM_011515102.2 | 71% | 62.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1119
- ORF length:
- 1053
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCCTTTGCC CTTGGCCCAG CGCGGCGGGG CAGGCGGCGG ACCCGGGCCG 121 CCGGCTCCCT GCTCTCTCGG GCCGCCATCC TCCTCTTTAT CTCCGCCTTC CTGGTGCGGG 181 TGCCCTCATC AGTTGGACAC TTGGTTCGAT TACCAAGAGC TTTTCGCTTG ACCAAAGATT 241 CAGTGAAAAT AGTGGGATCA ACAAGTTTTC CAGTGAAAGC GTATGTCATG CTCCATCAAA 301 AGAGTCCACA CGTGTTATGT GTAACGCAAC AACTGCGAAA TGCTGAACTG ATAGACCCAT 361 CATTCCAATG GTATGGGCCT AAAGGAAAAG TTGTTTCAGT AGAAAACCGC ACTGCACAAA 421 TAACATCCAC AGGAAGCCTT GTATTCCAAA ATTTTGAGGA GAGTATGAGT GGAATTTATA 481 CATGTTTCCT CGAATATAAA CCTACTGTGG AAGAAATTGT TAAACGTCTT CAACTAAAAT 541 ATGCTATATA TGCTTATCGT GAGCCTCATT ATTATTATCA GTTCACAGCT CGATATCATG 601 CAGCTCCCTG CAATAGCATT TATAATATTT CTTTTGAGAA GAAACTTCTT CAGATTTTAA 661 GCAAACTGCT TCTTGACCTT TCATGTGAAA TTTCCTTACT TAAGTCTGAA TGCCATCGCG 721 TTAAAATGCA AAGAGCTGGT TTGCAAAATG AATTGTTCTT TGCATTTTCA GTTTCATCTC 781 TAGACACTGA AAAAGGACCC AAGCGATGTA CAGACCATAA CTGTGAACCT TACAAAAGAC 841 TTTTTAAGGC TAAAAATCTC ATAGAGAGAT TTTTTAATCA ACAAGTAGAA ATTCTTGGCA 901 GACGTGCAGA ACAATTACCT CAAATATACT ATATTGAAGG TACTCTCCAA ATGGTTTGGA 961 TTAATCGCTG CTTTCCAGGA TATGGAATGA ATGTCCAGCA ACATCCAAAA TGTCCTGAGT 1021 GCTGTGTGAT CTGCAGCCCT GGATCATATA ACCCCCGTGA TGGAATTCAT TGCCTTCAAT 1081 GCAATAGCAG CCTGGTGTAT GGAGCAAAAA CGAGCTTATA CCCAACTTTC TTGTACAAAG 1141 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac