Construct: ORF ccsbBroadEn_07846

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003960.1_s300c1, BRDN0000457357
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAPK8IP3 (23162)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23162 MAPK8IP3 mitogen-activated protein k... NM_015133.5 99.9% 100% 2226C>A;3765G>C
2 human 23162 MAPK8IP3 mitogen-activated protein k... NM_001318852.1 99.8% 99.9% 601_603delAGC;2229C>A;3768G>C
3 human 23162 MAPK8IP3 mitogen-activated protein k... NM_001040439.2 99.5% 99.5% 1224_1225insGTGCGCGATGATTTCTTT;2208C>A;3747G>C
4 human 23162 MAPK8IP3 mitogen-activated protein k... XM_011522429.2 99.2% 99.3% 601_627del;2253C>A;3792G>C
5 human 23162 MAPK8IP3 mitogen-activated protein k... XM_011522430.2 98.8% 98.8% (many diffs)
6 human 23162 MAPK8IP3 mitogen-activated protein k... XM_005255190.2 98.7% 98.8% (many diffs)
7 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450204.1 96.3% 96.3% 2226C>A;3521_3670del;3915G>C
8 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450203.1 96.2% 96.2% (many diffs)
9 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450206.1 95.8% 95.8% (many diffs)
10 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450201.1 95.7% 95.6% (many diffs)
11 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450208.1 95.6% 95.6% (many diffs)
12 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450202.1 95.2% 95.2% (many diffs)
13 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450205.1 95% 95% (many diffs)
14 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450207.1 94.6% 94.6% (many diffs)
15 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450209.1 83.8% 83.5% (many diffs)
16 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450210.1 83.1% 77.3% (many diffs)
17 human 23162 MAPK8IP3 mitogen-activated protein k... XM_024450211.1 78% 78% (many diffs)
18 human 23162 MAPK8IP3 mitogen-activated protein k... XR_001751875.1 72.3% (many diffs)
19 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163447.1 86.4% 93.7% (many diffs)
20 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_013931.4 86.3% 93.7% (many diffs)
21 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163448.1 85.3% 92.6% (many diffs)
22 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163451.1 84.1% 91.5% (many diffs)
23 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163450.1 84.1% 91.4% (many diffs)
24 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163453.1 83.6% 91% (many diffs)
25 mouse 30957 Mapk8ip3 mitogen-activated protein k... NM_001163449.1 83.6% 90.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4077
ORF length:
4008
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATGGAGATC CAGATGGACG AGGGCGGCGG CGTGGTGGTG TACCAGGACG
121ACTACTGCTC CGGCTCGGTG ATGTCGGAGC GGGTGTCGGG CCTGGCGGGC TCCATCTACC
181GCGAGTTCGA GCGCCTCATC CACTGCTACG ACGAGGAGGT GGTCAAGGAG CTCATGCCGC
241TGGTGGTGAA CGTGCTGGAG AACCTAGACT CGGTGCTCAG CGAGAACCAG GAGCACGAGG
301TGGAGCTGGA GCTGCTGCGC GAGGACAACG AGCAGCTGCT CACCCAGTAC GAGCGTGAGA
361AGGCGCTGCG CAGGCAGGCG GAGGAGAAAT TCATTGAGTT TGAAGATGCT CTGGAACAAG
421AGAAGAAAGA GCTGCAAATC CAGGTGGAGC ACTACGAGTT CCAGACGCGC CAGCTGGAGC
481TGAAGGCCAA GAACTATGCC GATCAGATTT CCCGGTTGGA GGAGCGGGAG TCGGAGATGA
541AGAAGGAGTA CAATGCCCTG CACCAGCGGC ACACAGAGAT GATACAGACC TACGTGGAGC
601ACATTGAGAG GTCCAAGATG CAGCAGGTCG GAGGAAACAG CCAGACCGAG AGCAGCCTGC
661CGGGGCGGAG GAAGGAGCGC CCCACCTCCC TGAACGTGTT CCCCCTGGCT GACGGCACGG
721TACGTGCACA GATCGGGGGC AAGCTCGTGC CTGCGGGGGA CCACTGGCAC CTGAGTGACC
781TCGGCCAGCT GCAGTCCAGC TCCAGCTACC AGTGTCCACA GGATGAAATG TCCGAGTCAG
841GCCAGTCCTC GGCGGCCGCC ACACCCAGCA CCACAGGCAC CAAGTCCAAC ACGCCCACAT
901CCTCCGTGCC CTCGGCCGCC GTCACACCCC TCAACGAGAG CCTGCAGCCC CTGGGGGACT
961ATGGCGTGGG CTCCAAGAAC AGCAAGCGTG CCCGGGAGAA GCGCGACAGC CGCAACATGG
1021AAGTACAGGT CACCCAGGAG ATGCGCAACG TCAGTATAGG CATGGGCAGC AGTGACGAGT
1081GGTCTGATGT TCAAGACATT ATTGACTCCA CGCCAGAGCT GGACATGTGT CCAGAGACCC
1141GCCTGGACCG CACAGGAAGC AGCCCAACCC AGGGCATCGT GAACAAAGCT TTCGGCATCA
1201ACACCGACTC CCTGTACCAT GAGCTGTCGA CGGCAGGGTC TGAGGTCATC GGGGATGTGG
1261ACGAAGGGGC CGACCTCCTA GGGGAGTTCT CAGTGCGCGA TGATTTCTTT GGAATGGGCA
1321AAGAAGTGGG GAATCTGCTA CTGGAAAACT CACAGCTTCT GGAAACCAAA AACGCCTTGA
1381ATGTGGTGAA GAATGACCTG ATTGCCAAGG TCGACCAGCT GTCCGGGGAG CAGGAGGTGC
1441TGAGGGGCGA GTTGGAGGCT GCTAAGCAGG CCAAAGTCAA GCTGGAAAAC CGTATCAAGG
1501AGCTGGAAGA GGAACTGAAA AGAGTGAAGT CCGAGGCCAT CATCGCCCGC CGTGAACCCA
1561AAGAAGAGGC GGAGGATGTA AGCAGCTATC TCTGTACAGA ATCGGACAAA ATCCCCATGG
1621CCCAGCGCCG CCGCTTCACG CGGGTGGAGA TGGCCCGTGT GCTCATGGAG CGGAACCAGT
1681ACAAGGAGCG GCTGATGGAG CTGCAGGAGG CTGTGCGGTG GACTGAGATG ATCAGAGCGT
1741CCCGAGAGCA CCCATCCGTC CAGGAGAAGA AGAAGTCGAC CATCTGGCAG TTCTTCAGCC
1801GCCTCTTCAG CTCTTCCTCC AGCCCCCCTC CGGCCAAGCG CCCCTATCCC TCGGTGAACA
1861TCCACTACAA GTCACCCACC ACTGCCGGCT TCAGCCAGCG CCGCAACCAT GCCATGTGCC
1921CGATCTCGGC AGGCAGCCGG CCCCTGGAAT TCTTCCCTGA CGACGACTGC ACGTCCTCCG
1981CCCGTCGAGA GCAGAAGCGC GAGCAGTACC GCCAGGTGCG TGAGCACGTG CGTAACGACG
2041ACGGCCGTCT GCAGGCCTGC GGCTGGAGCC TGCCCGCCAA GTACAAGCAG CTGAGTCCCA
2101ACGGGGGCCA GGAGGACACG CGGATGAAGA ACGTGCCGGT GCCGGTGTAC TGCCGCCCTC
2161TGGTGGAGAA GGACCCCACC ATGAAGCTGT GGTGTGCCGC GGGCGTCAAC CTGAGCGGGT
2221GGAGGCCCAA TGAGGACGAC GCTGGGAATG GAGTCAAGCC AGCGCCAGGC CGCGATCCCC
2281TGACCTGCGA CCGAGAAGGA GACGGCGAGC CCAAGAGCGC CCACACGTCT CCCGAGAAGA
2341AGAAGGCCAA GGAGCTCCCT GAAATGGACG CCACCTCCAG CCGGGTGTGG ATCCTGACCA
2401GCACCCTGAC CACCAGCAAG GTGGTGATCA TCGACGCCAA CCAGCCGGGC ACGGTGGTGG
2461ACCAGTTCAC CGTCTGCAAC GCGCACGTGC TGTGCATCTC CAGCATCCCC GCGGCCAGCG
2521ACAGCGACTA CCCTCCCGGG GAGATGTTCC TGGACAGCGA CGTGAACCCA GAGGACCCGG
2581GCGCAGATGG CGTGCTGGCC GGTATCACCC TGGTGGGCTG TGCCACCCGC TGCAACGTGC
2641CGCGGAGCAA CTGCTCCTCC CGAGGGGACA CCCCAGTGCT AGACAAGGGG CAGGGGGAGG
2701TGGCCACCAT CGCCAACGGG AAGGTCAACC CGTCCCAGTC CACAGAGGAG GCCACAGAGG
2761CCACGGAGGT GCCAGACCCT GGGCCCAGCG AGCCAGAGAC AGCCACATTG CGGCCCGGGC
2821CTCTCACAGA GCACGTCTTC ACTGACCCAG CCCCGACCCC GTCCTCTGGC CCCCAGCCTG
2881GCAGCGAGAA CGGGCCAGAG CCTGACAGCA GCAGCACACG GCCAGAGCCA GAGCCCAGCG
2941GGGACCCCAC GGGAGCAGGC AGCAGTGCTG CACCCACCAT GTGGCTGGGA GCCCAGAACG
3001GCTGGCTCTA TGTGCACTCG GCTGTGGCCA ACTGGAAGAA GTGCCTGCAC TCCATCAAGC
3061TGAAGGATTC TGTGCTGAGC CTGGTGCATG TCAAAGGCCG TGTGCTGGTG GCTCTGGCGG
3121ACGGGACCCT GGCCATCTTC CACCGTGGTG AAGATGGCCA GTGGGATCTG AGCAACTATC
3181ACCTAATGGA CCTGGGCCAC CCGCACCACT CCATCCGCTG CATGGCTGTT GTGTACGACC
3241GCGTGTGGTG TGGCTACAAG AACAAGGTGC ACGTCATCCA GCCCAAGACC ATGCAGATAG
3301AGAAGTCATT TGACGCCCAC CCGCGGCGGG AGAGCCAGGT GCGGCAGCTG GCGTGGATCG
3361GCGATGGCGT ATGGGTGTCC ATCCGCCTGG ACTCCACCCT GAGGCTCTAC CATGCACACA
3421CGCACCAGCA TCTACAGGAC GTGGACATTG AGCCCTACGT CAGCAAGATG CTAGGCACTG
3481GCAAGCTGGG TTTCTCCTTC GTACGCATCA CGGCCCTGCT TGTCGCGGGC AGCCGGCTCT
3541GGGTGGGCAC CGGCAACGGA GTGGTCATCT CCATCCCCCT GACAGAGACT GTGGTCCTGC
3601ACCGAGGCCA GCTCCTGGGG CTCCGAGCCA ATAAGACATC CCCCACCTCT GGGGAGGGCG
3661CCCGTCCCGG GGGCATCATC CACGTGTATG GCGATGACAG CAGTGACAGG GCGGCCAGCA
3721GCTTCATCCC CTACTGCTCC ATGGCCCAGG CCCAGCTATG CTTCCATGGG CACCGCGATG
3781CCGTGAAGTT CTTTGTCTCG GTGCCAGGGA ACGTGCTGGC CACCCTGAAT GGCAGTGTGC
3841TGGACAGCCC AGCCGAGGGC CCTGGGCCAG CTGCCCCTGC CTCGGAGGTC GAGGGCCAGA
3901AGCTGCGGAA CGTGCTGGTG CTGAGCGGCG GGGAGGGCTA CATCGACTTC CGCATTGGAG
3961ACGGAGAGGA CGACGAGACG GAGGAGGGCG CAGGGGACAT GAGCCAGGTG AAGCCCGTGC
4021TGTCCAAGGC AGAGCGCAGT CACATCATCG TGTGGCAGGT GTCCTACACC CCCGAGTTGC
4081CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
4141aac

Download FASTA (ORF) (Full)