Transcript: Mouse NM_001163453.1

Mus musculus mitogen-activated protein kinase 8 interacting protein 3 (Mapk8ip3), transcript variant 7, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Mapk8ip3 (30957)
Length:
5468
CDS:
124..4026

Additional Resources:

NCBI RefSeq record:
NM_001163453.1
NBCI Gene record:
Mapk8ip3 (30957)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001163453.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361634 GGTCCGATGTTCAGGACATTA pLKO_005 1046 CDS 100% 13.200 18.480 N Mapk8ip3 n/a
2 TRCN0000361707 GAGATGCGGAACGTCAGTATC pLKO_005 1003 CDS 100% 10.800 7.560 N Mapk8ip3 n/a
3 TRCN0000361706 GCATCACAGCCTTACTCATTG pLKO_005 3452 CDS 100% 10.800 7.560 N Mapk8ip3 n/a
4 TRCN0000361635 GGACATTGAGCCCTATGTTAG pLKO_005 3390 CDS 100% 10.800 7.560 N Mapk8ip3 n/a
5 TRCN0000361633 TGTTGTGAATGACCGAGTTTG pLKO_005 3174 CDS 100% 10.800 7.560 N Mapk8ip3 n/a
6 TRCN0000088716 CCGAGGAGAAATTCATCGAAT pLKO.1 434 CDS 100% 4.950 2.970 N Mapk8ip3 n/a
7 TRCN0000088717 CGAGGAGAAATTCATCGAATT pLKO.1 435 CDS 100% 0.000 0.000 N Mapk8ip3 n/a
8 TRCN0000088714 CCAGTGAGAATGGGTCAGAAT pLKO.1 2828 CDS 100% 4.950 3.465 N Mapk8ip3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163453.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07846 pDONR223 100% 83.6% 91% None (many diffs) n/a
2 ccsbBroad304_07846 pLX_304 0% 83.6% 91% V5 (many diffs) n/a
3 TRCN0000479298 ATAGCGTGTATTCGTCGCACCGGT pLX_317 8.9% 83.6% 91% V5 (many diffs) n/a
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