Construct: ORF ccsbBroadEn_08252
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008165.1_s300c1, BRDN0000397955
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACP6 (51205)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NM_016361.5 | 99.7% | 99.7% | 765C>A;823A>C;1239C>T |
| 2 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NM_001323625.2 | 91.9% | 87.4% | (many diffs) |
| 3 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | XM_011509601.3 | 91.4% | 86.4% | (many diffs) |
| 4 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | XM_017001422.2 | 89.4% | 88.7% | (many diffs) |
| 5 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | XM_024447500.1 | 72.1% | 72.1% | (many diffs) |
| 6 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NR_136633.2 | 48.7% | (many diffs) | |
| 7 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NR_136636.2 | 43.1% | (many diffs) | |
| 8 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NR_136634.2 | 42.3% | (many diffs) | |
| 9 | human | 51205 | ACP6 | acid phosphatase 6, lysopho... | NR_136635.2 | 17.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1350
- ORF length:
- 1284
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT CACTGGTGTG TTCAGCATGC GCTTGTGGAC CCCAGTGGGC GTCCTGACCT 121 CGCTGGCGTA CTGCCTGCAC CAGCGGCGGG TGGCCCTGGC CGAGCTGCAG GAGGCCGATG 181 GCCAGTGTCC GGTCGACCGC AGCCTGCTGA AGTTGAAAAT GGTGCAGGTC GTGTTTCGAC 241 ACGGGGCTCG GAGTCCTCTC AAGCCGCTCC CGCTGGAGGA GCAGGTAGAG TGGAACCCCC 301 AGCTATTAGA GGTCCCACCC CAAACTCAGT TTGATTACAC AGTCACCAAT CTAGCTGGTG 361 GTCCGAAACC ATATTCTCCT TACGACTCTC AATACCATGA GACCACCCTG AAGGGGGGCA 421 TGTTTGCTGG GCAGCTGACC AAGGTGGGCA TGCAGCAAAT GTTTGCCTTG GGAGAGAGAC 481 TGAGGAAGAA CTATGTGGAA GACATTCCCT TTCTTTCACC AACCTTCAAC CCACAGGAGG 541 TCTTTATTCG TTCCACTAAC ATTTTTCGGA ATCTGGAGTC CACCCGTTGT TTGCTGGCTG 601 GGCTTTTCCA GTGTCAGAAA GAAGGACCCA TCATCATCCA CACTGATGAA GCAGATTCAG 661 AAGTCTTGTA TCCCAACTAC CAAAGCTGCT GGAGCCTGAG GCAGAGAACC AGAGGCCGGA 721 GGCAGACTGC CTCTTTACAG CCAGGAATCT CAGAGGATTT GAAAAAGGTG AAGGACAGGA 781 TGGGCATTGA CAGTAGTGAT AAAGTGGACT TCTTCATCCT CCTGGACAAA GTGGCTGCCG 841 AGCAGGCACA CAACCTCCCA AGCTGCCCCA TGCTGAAGAG ATTTGCACGG ATGATCGAAC 901 AGAGAGCTGT GGACACATCC TTGTACATAC TGCCCAAGGA AGACAGGGAA AGTCTTCAGA 961 TGGCAGTAGG CCCATTCCTC CACATCCTAG AGAGCAACCT GCTGAAAGCC ATGGACTCTG 1021 CCACTGCCCC CGACAAGATC AGAAAGCTGT ATCTCTATGC GGCTCATGAT GTGACCTTCA 1081 TACCGCTCTT AATGACCCTG GGGATTTTTG ACCACAAATG GCCACCGTTT GCTGTTGACC 1141 TGACCATGGA ACTTTACCAG CACCTGGAAT CTAAGGAGTG GTTTGTGCAG CTCTATTACC 1201 ACGGGAAGGA GCAGGTGCCG AGAGGTTGCC CTGATGGGCT CTGCCCGCTG GACATGTTCT 1261 TGAATGCCAT GTCAGTTTAT ACCTTAAGCC CAGAAAAATA CCATGCACTC TGCTCTCAAA 1321 CTCAGGTGAT GGAAGTTGGA AATGAAGAGT ACCCAACTTT CTTGTACAAA GTtggcatta 1381 taagaaagca ttgcttatca atttgttgca acgaac