Construct: ORF ccsbBroadEn_08495

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000159.1_s300c1, BRDN0000398378
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UQCC1 (55245)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_018244.5 99.8% 99.6% 152G>A
2 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528877.1 95.4% 95.2% 127_168del;194G>A
3 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_199487.2 91.1% 90.9% 152G>A;572_573ins78
4 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528878.2 89.2% 89.2% 127_128ins96
5 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528879.1 84.5% 84.2% 0_1ins138;14G>A
6 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528880.2 84.5% 84.2% 0_1ins138;14G>A
7 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_001184977.1 77.2% 77.2% 128_129ins204
8 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528881.3 66.8% 66.8% 0_1ins297
9 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528882.2 54.6% 54.5% 0_1ins405;2_4delTGG
10 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528883.2 54.6% 54.5% 0_1ins405;2_4delTGG
11 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528884.2 54.6% 54.5% 0_1ins405;2_4delTGG
12 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... NM_018888.4 87% 87.2% (many diffs)
13 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... XM_011239704.2 81.6% 79.6% (many diffs)
14 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... XM_011239707.2 41.7% 37.6% (many diffs)
15 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... NR_024487.2 29.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
966
ORF length:
897
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGTTGCTG GTGCGAGTCC TTAGGAACCA GACTAGCATT TCTCAGTGGG
121TTCCAGTATG CAGCCGATTG ATACCTGTGT CTCCTACCCA AGGACAGGGG GACAGGGCTC
181TGTCTCGCAC TTCCCAGTGG CCCCAGATGA GCCAGTCCCA AGCATGTGGT GGATCAGAAC
241AGATTCCTGG AATAGACATA CAGCTGAATA GGAAGTATCA CACCACACGT AAGCTTTCTA
301CTACCAAAGA TTCCCCACAG CCTGTTGAGG AGAAGGTTGG TGCTTTCACA AAGATAATAG
361AAGCCATGGG ATTCACGGGA CCTTTGAAAT ACAGTAAATG GAAGATTAAG ATTGCGGCCC
421TGCGCATGTA TACTAGCTGT GTGGAGAAAA CTGACTTCGA GGAATTCTTT CTAAGGTGTC
481AGATGCCTGA TACATTCAAT TCATGGTTTC TTATAACCCT ACTCCACGTC TGGATGTGTC
541TAGTCCGAAT GAAGCAGGAA GGCCGGAGTG GGAAGTACAT GTGTCGTATC ATAGTTCATT
601TTATGTGGGA GGATGTTCAG CAGCGCGGCA GAGTCATGGG GGTTAATCCC TATATCCTGA
661AGAAGAACAT GATCCTCATG ACAAATCATT TCTATGCAGC GATCTTGGGA TATGATGAGG
721GGATCCTTTC AGATGATCAT GGGCTGGCCG CTGCCCTCTG GAGAACCTTC TTCAACCGGA
781AATGTGAAGA CCCTCGACAT CTTGAATTGC TGGTAGAGTA TGTGAGGAAA CAGATACAGT
841ACCTGGACTC CATGAACGGG GAGGATCTGC TTCTGACAGG GGAGGTGAGC TGGCGCCCTC
901TAGTGGAGAA GAATCCTCAG AGCATCCTGA AGCCCCATTC TCCGACTTAC AACGACGAGG
961GACTTTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1021gttgcaacga ac

Download FASTA (ORF) (Full)