Construct: ORF ccsbBroadEn_08591
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014406.1_s300c1, BRDN0000456868
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRP2BP (55805)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55805 | LRP2BP | LRP2 binding protein | NM_018409.3 | 99.9% | 100% | 81T>C |
| 2 | human | 55805 | LRP2BP | LRP2 binding protein | XM_006714260.4 | 99.9% | 100% | 81T>C |
| 3 | human | 55805 | LRP2BP | LRP2 binding protein | XM_017008410.2 | 99.9% | 100% | 81T>C |
| 4 | human | 55805 | LRP2BP | LRP2 binding protein | XM_024454134.1 | 99.9% | 100% | 81T>C |
| 5 | human | 55805 | LRP2BP | LRP2 binding protein | XM_024454135.1 | 99.9% | 100% | 81T>C |
| 6 | human | 55805 | LRP2BP | LRP2 binding protein | XM_024454136.1 | 99.9% | 100% | 81T>C |
| 7 | human | 55805 | LRP2BP | LRP2 binding protein | XM_024454138.1 | 99.9% | 100% | 81T>C |
| 8 | human | 55805 | LRP2BP | LRP2 binding protein | XM_017008411.2 | 99.6% | 99.7% | 81T>C;330_331insGAG |
| 9 | human | 55805 | LRP2BP | LRP2 binding protein | XM_011532110.3 | 90.2% | 89.6% | (many diffs) |
| 10 | human | 55805 | LRP2BP | LRP2 binding protein | XM_005263125.5 | 71.7% | 71.7% | 0_1ins294 |
| 11 | human | 55805 | LRP2BP | LRP2 binding protein | XM_006714265.4 | 71.7% | 71.7% | 0_1ins294 |
| 12 | human | 55805 | LRP2BP | LRP2 binding protein | XM_011532111.3 | 71.7% | 71.7% | 0_1ins294 |
| 13 | human | 55805 | LRP2BP | LRP2 binding protein | XM_024454137.1 | 71.4% | 71.4% | 0_1ins294;36_37insGAG |
| 14 | mouse | 67620 | Lrp2bp | Lrp2 binding protein | NM_026278.3 | 82.3% | 85.6% | (many diffs) |
| 15 | mouse | 67620 | Lrp2bp | Lrp2 binding protein | XM_006509483.1 | 54.7% | 58.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1110
- ORF length:
- 1041
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGTTGACC AGTGAAAAGT TGCCCAAGAA CCCCTTTTAT GCCTCTGTAT 121 CTCAGTATGC TGCTAAAAAC CAAAAATTCT TCCAGTGGAA AAAGGAAAAG ACTGATTACA 181 CCCATGCTAA TTTGGTGGAT AAGGCATTGC AGCTCTTGAA GGAAAGAATA CTGAAAGGAG 241 ACACTCTGGC ATATTTCCTA CGAGGTCAAC TATATTTTGA AGAGGGATGG TATGAAGAAG 301 CATTAGAACA GTTTGAAGAA ATCAAGGAGA AAGACCATCA AGCAACTTAC CAGCTAGGAG 361 TGATGTACTA TGATGGGCTG GGGACCACTC TAGACGCTGA GAAAGGGGTG GACTATATGA 421 AGAAAATTCT TGATTCTCCA TGTCCCAAAG CAAGACACTT AAAATTTGCA GCTGCTTACA 481 ACCTCGGAAG AGCTTATTAT GAAGGAAAAG GTGTTAAACG ATCAAATGAG GAAGCTGAAA 541 GACTGTGGCT TATCGCAGCA GACAATGGAA ATCCCAAAGC TAGTGTGAAG GCTCAAAGTA 601 TGCTCGGGCT GTATTACTCA ACCAAGGAGC CCAAGGAGTT AGAAAAGGCA TTTTACTGGC 661 ATTCCGAAGC ATGTGGCAAT GGGAATCTGG AGTCCCAGGG TGCACTTGGG CTCATGTACT 721 TGTATGGACA AGGCATCCGG CAGGATACGG AAGCTGCCCT GCAGTGCTTA AGAGAAGCAG 781 CAGAACGCGG AAACGTCTAT GCTCAAGGGA ATCTCGTGGA GTATTACTAT AAGATGAAAT 841 TTTTTACAAA GTGTGTTGCA TTTTCCAAAA GGATCGCTGA CTATGATGAG GTTCACGACA 901 TCCCCATGAT CGCCCAGGTC ACAGACTGTC TCCCGGAGTT CATCGGCAGA GGCATGGCAA 961 TGGCATCCTT CTACCACGCA AGGTGTCTTC AGCTTGGCTT GGGCATCACC AGGGATGAAA 1021 CAACCGCTAA ACACTATTAT TCTAAAGCTT GTCGTCTGAA TCCCGCATTG GCAGATGAAC 1081 TTCACTCCTT ACTTATTCGT CAAAGAATTT TGCCAACTTT CTTGTACAAA GTTGGcatta 1141 taagaaagca ttgcttatca atttgttgca acgaac