Transcript: Human XM_006714265.4

PREDICTED: Homo sapiens LRP2 binding protein (LRP2BP), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LRP2BP (55805)
Length:
5554
CDS:
487..1236

Additional Resources:

NCBI RefSeq record:
XM_006714265.4
NBCI Gene record:
LRP2BP (55805)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714265.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412926 CAACCGCTAAACACTATTATT pLKO_005 1145 CDS 100% 15.000 21.000 N LRP2BP n/a
2 TRCN0000435206 ATCTCGTGGAGTATTACTATA pLKO_005 935 CDS 100% 13.200 18.480 N LRP2BP n/a
3 TRCN0000146788 CCGAGACCATATCAAGTATTA pLKO.1 1476 3UTR 100% 13.200 18.480 N LRP2BP n/a
4 TRCN0000422777 TATACAGCAAGTATCGTTTAT pLKO_005 1506 3UTR 100% 13.200 18.480 N LRP2BP n/a
5 TRCN0000130453 GCAGATGAACTTCACTCCTTA pLKO.1 1195 CDS 100% 4.950 6.930 N LRP2BP n/a
6 TRCN0000436289 CAACCTCGGAAGAGCTTATTA pLKO_005 603 CDS 100% 15.000 10.500 N LRP2BP n/a
7 TRCN0000146274 CCTCACTTCAAGCACTAATTT pLKO.1 4229 3UTR 100% 15.000 10.500 N LRP2BP n/a
8 TRCN0000128299 GAAAGACCATCAAGCAACTTA pLKO.1 453 5UTR 100% 5.625 3.938 N LRP2BP n/a
9 TRCN0000129927 GATGAACTTCACTCCTTACTT pLKO.1 1198 CDS 100% 5.625 3.938 N LRP2BP n/a
10 TRCN0000149614 GCCCTAAGTAAAGAGCACTTT pLKO.1 3092 3UTR 100% 4.950 3.465 N LRP2BP n/a
11 TRCN0000149734 GCATATTTCCTACGAGGTCAA pLKO.1 373 5UTR 100% 4.050 2.835 N LRP2BP n/a
12 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 5293 3UTR 100% 4.950 2.475 Y ERAP2 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 5294 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3376 3UTR 100% 4.950 2.475 Y KAAG1 n/a
15 TRCN0000178741 CACACACATACACACACACAA pLKO.1 3390 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714265.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08591 pDONR223 100% 71.7% 71.7% None 0_1ins294 n/a
2 ccsbBroad304_08591 pLX_304 0% 71.7% 71.7% V5 0_1ins294 n/a
3 TRCN0000477984 GTGATGTAGACTGAACAACTAATA pLX_317 33.9% 71.7% 71.7% V5 0_1ins294 n/a
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