Construct: ORF ccsbBroadEn_08604
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015616.1_s300c1, BRDN0000398634
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CBWD1 (55871)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_018491.3 | 99.5% | 99.4% | (many diffs) |
2 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_201453.3 | 98.9% | 97.9% | (many diffs) |
3 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001330668.1 | 98.9% | 97.7% | (many diffs) |
4 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_172003.3 | 98.7% | 97.9% | (many diffs) |
5 | human | 644019 | CBWD6 | COBW domain containing 6 | NM_001085457.1 | 98.4% | 97.2% | (many diffs) |
6 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145356.1 | 94.7% | 94.6% | (many diffs) |
7 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251513.4 | 94.5% | 94.4% | (many diffs) |
8 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277637.2 | 94% | 93.1% | (many diffs) |
9 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001363751.1 | 94% | 92.9% | (many diffs) |
10 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272750.1 | 94% | 92.9% | (many diffs) |
11 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330336.1 | 93.9% | 93.1% | (many diffs) |
12 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_001291821.1 | 93.9% | 92.9% | (many diffs) |
13 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015035.1 | 93.6% | 92.4% | (many diffs) |
14 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015020.1 | 93.5% | 92.1% | (many diffs) |
15 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251514.1 | 92.3% | 92.1% | (many diffs) |
16 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277639.2 | 91.8% | 90.8% | (many diffs) |
17 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272751.1 | 91.8% | 90.6% | (many diffs) |
18 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330337.1 | 91.5% | 90.8% | (many diffs) |
19 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447653.1 | 91.5% | 90.3% | (many diffs) |
20 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015019.1 | 90.1% | 88.7% | (many diffs) |
21 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015023.1 | 88.7% | 87.3% | (many diffs) |
22 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145355.1 | 88.6% | 86.5% | (many diffs) |
23 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330339.1 | 87.9% | 85.2% | (many diffs) |
24 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251515.1 | 87.5% | 87.3% | (many diffs) |
25 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277640.2 | 87% | 86% | (many diffs) |
26 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001024916.3 | 87% | 85.8% | (many diffs) |
27 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014730.1 | 86.8% | 85.8% | (many diffs) |
28 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_005263604.2 | 86.7% | 86% | (many diffs) |
29 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015036.1 | 86.7% | 85.5% | (many diffs) |
30 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015024.1 | 86.6% | 85.3% | (many diffs) |
31 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015021.1 | 85.5% | 84.1% | (many diffs) |
32 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517961.2 | 83.9% | 81.7% | (many diffs) |
33 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015022.1 | 83.4% | 82.1% | (many diffs) |
34 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517962.3 | 79.8% | 79.7% | (many diffs) |
35 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_006717116.1 | 79.4% | 78.9% | (many diffs) |
36 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_006716914.1 | 79.4% | 78.7% | (many diffs) |
37 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_011510667.1 | 79.2% | 78.7% | (many diffs) |
38 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015025.1 | 78.8% | 77.5% | (many diffs) |
39 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746301.1 | 72.4% | (many diffs) | |
40 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014455.1 | 72.4% | 71.6% | (many diffs) |
41 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015026.1 | 71.5% | 70.7% | (many diffs) |
42 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746303.1 | 69.2% | (many diffs) | |
43 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014456.1 | 68% | 67% | (many diffs) |
44 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_024447453.1 | 68% | 67% | (many diffs) |
45 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015027.1 | 67.5% | 62.1% | (many diffs) |
46 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746302.1 | 66.7% | (many diffs) | |
47 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746234.1 | 65.1% | (many diffs) | |
48 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428504.1 | 64.9% | (many diffs) | |
49 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746352.1 | 64% | (many diffs) | |
50 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746232.1 | 63.4% | (many diffs) | |
51 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_024452717.1 | 63.2% | 62.7% | (many diffs) |
52 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015030.1 | 62.7% | 57.4% | (many diffs) |
53 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746299.1 | 62.7% | (many diffs) | |
54 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517963.1 | 62.3% | 62.2% | 0_1ins444;132A>G;401C>N |
55 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956769.1 | 61.8% | (many diffs) | |
56 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746297.1 | 61.6% | (many diffs) | |
57 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138473.1 | 61.2% | (many diffs) | |
58 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014457.1 | 60.9% | 60% | (many diffs) |
59 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015028.1 | 60.4% | 59.2% | (many diffs) |
60 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251517.5 | 60.3% | 59.3% | (many diffs) |
61 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746237.2 | 60.3% | (many diffs) | |
62 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_017014925.1 | 59.1% | 59.4% | (many diffs) |
63 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015029.2 | 59.1% | 58.2% | (many diffs) |
64 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746300.1 | 58.8% | (many diffs) | |
65 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014458.1 | 58.7% | 58.4% | (many diffs) |
66 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428503.2 | 58.6% | (many diffs) | |
67 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746360.1 | 58.3% | (many diffs) | |
68 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138474.1 | 58.2% | (many diffs) | |
69 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956768.1 | 57.8% | (many diffs) | |
70 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_002956784.1 | 55.8% | (many diffs) | |
71 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330340.1 | 55% | 53.6% | (many diffs) |
72 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330342.1 | 55% | 53.6% | (many diffs) |
73 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014459.1 | 54.9% | 53.6% | (many diffs) |
74 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015032.1 | 54.8% | 53.2% | (many diffs) |
75 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_011518706.2 | 54.8% | 53.6% | (many diffs) |
76 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929802.1 | 54.5% | (many diffs) | |
77 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447652.1 | 54.5% | 52.8% | (many diffs) |
78 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517964.3 | 53% | 52% | (many diffs) |
79 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015031.1 | 52.5% | 50.9% | (many diffs) |
80 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_244814.2 | 52.4% | (many diffs) | |
81 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746239.1 | 51.8% | (many diffs) | |
82 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746240.1 | 50.7% | (many diffs) | |
83 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746359.1 | 50.3% | (many diffs) | |
84 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929803.1 | 50.2% | (many diffs) | |
85 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746353.1 | 49.5% | (many diffs) | |
86 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746238.1 | 49% | (many diffs) | |
87 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929804.1 | 48.7% | (many diffs) | |
88 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_922864.1 | 47.9% | (many diffs) | |
89 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014461.1 | 47.9% | 46.6% | (many diffs) |
90 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014732.1 | 47.8% | 46.6% | (many diffs) |
91 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746298.1 | 47.4% | (many diffs) | |
92 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_427073.2 | 46.7% | (many diffs) | |
93 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746361.1 | 46.3% | (many diffs) | |
94 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746304.1 | 46% | (many diffs) | |
95 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015033.1 | 45.9% | 44.4% | (many diffs) |
96 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746241.2 | 45.1% | (many diffs) | |
97 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746362.1 | 44.5% | (many diffs) | |
98 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286835.1 | 43.4% | 38.8% | (many diffs) |
99 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746363.1 | 43.4% | (many diffs) | |
100 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_002959242.1 | 37.7% | (many diffs) | |
101 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015034.1 | 31.8% | 29.6% | (many diffs) |
102 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286836.1 | 28.4% | 28.3% | 51G>A;233C>T;339_340ins846 |
103 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956766.1 | 26.2% | (many diffs) | |
104 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746233.1 | 25.9% | (many diffs) | |
105 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746235.1 | 25.8% | (many diffs) | |
106 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746231.1 | 25.5% | (many diffs) | |
107 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956767.1 | 22.6% | (many diffs) | |
108 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NM_146097.3 | 84% | 80.6% | (many diffs) |
109 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NR_033744.1 | 49.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1254
- ORF length:
- 1185
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTACCGGCT GTTGGATCTG TGGATGAGGA AGAGGATCCT GCGGAGGAAG 121 ATTGTCCTGA ATTGGTTCCC ATTGAGACGA CGCAAAGCGA GGAGGAGGAA AAGTCTGGCC 181 TCGGCGCCAA GATCCCAGTC ACAATTATCA CCGGGTATTT AGGTGCTGGG AAGACAACAC 241 TTCTGAACTA TATTTTGACA GAGCAACATA GTAAAAGAGT AGCGGTCATT TTAAATGAAT 301 TTGGGGAAGG AAGTGCGCTG GAGAAATCCT TAGCTGTCAG CCAAGGTGGA GAGCTCTATG 361 AAGAGTGGCT GGAACTTAGA AACGGTTGCC TCTGCTGTTC AGTGAAGGAC AGTGGCCTTA 421 GAGCTATTGA GAATTTGATG CAAAAGAAGG GGAAATTTGA TTACATACTG TTAGAGACCA 481 CTGGATTAGC AGACCCTGGT GCAGTGGCTT CTATGTTTTG GGTTGATGCT GAATTAGGGA 541 GTGATATTTA TCTTGATGGT ATCATAACTA TTGTGGATTC AAAATATGGA TTAAAACATT 601 TAACAGAAGA GAAACCTGAT GGCCTTATCA ATGAAGCTAC TAGGCAAGTT GCTTTGGCAG 661 ATGCCATTCT CATTAATAAA ACAGACCTGG TTCCAGAAGA AGATGTAAAG AAATTAAGAA 721 CGACAATTAG ATCCATAAAT GGACTAGGAC AAATCTTAGA AACACAAAGA TCAAGAGTTG 781 ATCTCTCTAA TGTATTAGAT CTTCATGCCT TTGATAGTCT CTCTGGAATA AGTTTGCAGA 841 AAAAACTTCA GCATGTGCCA GGAACACAAC CTCACCTTGA TCAGAGTATT GTTACAATCA 901 CATTTGAAGT ACNAGGAAAT GCAAAGGAAG AACATCTTAA TATGTTTATT CAGAATCTCC 961 TGTGGGAAAA GAATGTGAGA AACAAGGACA ATCACTGCAT GGAGGTCATA AGGCTGAAGG 1021 GATTGGTGTC AATCAAAGAC AAATCACAAC AAGTGATTGT CCAGGGTGTC CATGAGCTCT 1081 ATGATCTGGA GGAGACTCCA GTGAGCTGGA AGGATGACAC TGAGAGAACA AATCGATTGG 1141 TCCTCCTTGG CAGAAATTTA GATAAGGATA TCCTTAAACA GCTGTTTATA GCTACTGTGA 1201 CAGAAACAGA AAAGCAGTGG ACAACACGTT TCCAAGAAGA TCAAGTTTGT ACATTGCCAA 1261 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac