Construct: ORF ccsbBroadEn_08657
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013732.1_s300c1, BRDN0000393287
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAPOLB (56903)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56903 | PAPOLB | poly(A) polymerase beta | NM_020144.5 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001363665.2 | 78% | 76.5% | (many diffs) |
| 3 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001363666.2 | 77.9% | 76.4% | (many diffs) |
| 4 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001363662.2 | 75.3% | 73.9% | (many diffs) |
| 5 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001363664.2 | 75.2% | 73.7% | (many diffs) |
| 6 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_032632.4 | 73.2% | 71.8% | (many diffs) |
| 7 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001293627.1 | 73.1% | 71.7% | (many diffs) |
| 8 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001293628.1 | 44.5% | 41.1% | (many diffs) |
| 9 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001293632.2 | 44.5% | 41.1% | (many diffs) |
| 10 | human | 10914 | PAPOLA | poly(A) polymerase alpha | NM_001252006.1 | 38.5% | 39.7% | (many diffs) |
| 11 | mouse | 56522 | Papolb | poly (A) polymerase beta (t... | NM_019943.2 | 84.6% | 84.5% | (many diffs) |
| 12 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_006515595.2 | 77% | 75.5% | (many diffs) |
| 13 | mouse | 18789 | Papola | poly (A) polymerase alpha | NM_001347440.1 | 75.4% | 74.2% | (many diffs) |
| 14 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_017314994.1 | 75.3% | 74.1% | (many diffs) |
| 15 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_006515594.2 | 74.8% | 73.3% | (many diffs) |
| 16 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_006515593.3 | 74.1% | 72.6% | (many diffs) |
| 17 | mouse | 18789 | Papola | poly (A) polymerase alpha | NM_011112.4 | 73.2% | 72.1% | (many diffs) |
| 18 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_017314992.1 | 73.1% | 72% | (many diffs) |
| 19 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_006515596.3 | 72.1% | 70.6% | (many diffs) |
| 20 | mouse | 18789 | Papola | poly (A) polymerase alpha | XM_006515592.2 | 72% | 70.5% | (many diffs) |
| 21 | mouse | 18789 | Papola | poly (A) polymerase alpha | XR_381486.2 | 47% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1977
- ORF length:
- 1911
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GCCGTTTCCG GTGACAACCC AGGGACCACC GCAGCCGGCG CCGCCGCCGA 121 ATCGCTACGG CGTCTCCTCG CCTATCAGTC TAGCGGTCCC CAAGGAGACG GACTGCCTCC 181 TCACCCAGAG GCTAATAGAA ACCCTCAGGC CCTTCGGGGT CTTCGAAGAG GAAGAGGAAC 241 TGCAGCGCAG GATTTTAGTT TTGGACAAAT TAAATAATCT GGTAAAGGAA TGGATACGCG 301 AAATCAGTGA AAGCAAGAGT CTTCCCCAGT CTGTAATTGA AAACGTTGGA GGAAAGATTT 361 TTACGTTTGG CTCTTACAGA TTAGGAGTAC ATACGAAAGG CGCAGATATT GACGCCTTGT 421 GCGTTGCACC AAGTCATGTG GATCGAAGCG ACTTTTTCAC CTCATTCTAT GCTAAACTGA 481 AACTACAGGA GGAAGTGAAA GATTTAAGGG CTGTCCAGGA GGCATTTGTG CCAGTTATCA 541 AACTGTGTTT TGATGGGATA GAGATTGATA TTTTATTTGC AAGATTAGCA CTACAGACTA 601 TTCCAGAAGA TTTGGACTTA AGAGATGACA GTCTACTTAA AAATTTAGAC ATTAGATGCA 661 TAAGAATCCT TAATGGTTGC CGGGTAACCG ATGAAATTTT ACATCTAGTG CCAAACATTG 721 ACAACTTCAG GCTGACTCTG AGAGCCATCA AACTGTGGGC CAAGTGCCAC AATATCTATT 781 CCAATATATT AGGTTTCCTC GGAGGTGTTT CCTGGGCCAT GCTAGTAGCA AGAACTTGTC 841 AGCTTTATCC AAATGCAGTA GCGTCAACTC TTGTACGGAA ATTCTTCTTG GTATTTTCAG 901 AATGGGAATG GCCAAACCCA GTGTTACTGA AGGAGCCTGA AGAACGGAAT CTTAATTTGC 961 CTGTATGGGA CCCAAGAGTA AATCCCAGTG ATAGGTACCA TCTTATGCCT ATCATCACAC 1021 CAGCATACCC ACAGCAGAAC TCCACATACA ACGTGTCTAT TTCAACCAGG ATGGTCATGA 1081 TTGAGGAGTT TAAACAGGGG CTTGCTATCA CACACGAGAT TTTGCTAAGT AAGGCAGAGT 1141 GGTCCAAACT CTTTGAAGCT CCAAGCTTCT TTCAAAAGTA CAAGCATTAT ATTGTACTTC 1201 TGGCAAGTGC ATCAACAGAA AAACAACATT TAGAATGGGT GGGCTTGGTG GAATCAAAGA 1261 TCCGAATCCT GGTTGGGAGC TTGGAGAAGA ATGAATTTAT TACACTGGCA CATGTGAATC 1321 CACAGTCATT TCCAGCACCC AAAGAAAATC CTGATATGGA AGAATTTCGT ACAATGTGGG 1381 TGATTGGGTT AGGGCTAAAA AAGCCAGATA ATTCTGAAAT TCTCAGCATT GATCTCACCT 1441 ATGATATCCA GTCTTTCACA GATACTGTTT ATAGGCAAGC AGTGAATAGT AAGATGTTTG 1501 AGATGGGTAT GAAAATTACT GCAGTGCATT TAAGAAGAAA GGAACTTCAC CAGCTGCTGC 1561 CTCATCATGT GCTTCAGGAC AAGAAAGCAC ACTCAACAGA AGGTAGAAGA TTGACAGATT 1621 TGAACGACAG CAGCTTTGAC TTGTCTGCAG GCTGTGAAAA CAGCATGTCT GTGCCTTCAT 1681 CTACTAGCAC TATGAAGACA GGCCCATTGA TTAGCAGTTC TCAGGGTAGA AACAGTCCTG 1741 CCTTGGCTGT AATGACAGCA TCTGTGGCTA ACATACAGGC TACTGAATTT TCCTTGCAAC 1801 AGGTGAATAC CAATGAAAGT TCAGGGGTTG CATTAAACGA AAGTATTCCT CACGCTGTCT 1861 CTCAGCCTGC CATTTCTCCA TCACCAAAGG CCATGGTCGC CAGAGTTGTT TCTTCAACAT 1921 GTCTCATAAG CCATCCAGAC CTTCAGGAAA CTCAGCAACA AACATATCTA ATCCTATACC 1981 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2041 aac