Construct: ORF ccsbBroadEn_08954
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016469.1_s300c1, BRDN0000398172
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLIP4 (79745)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_001287527.2 | 99.9% | 100% | 516A>G |
| 2 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_024692.6 | 99.9% | 100% | 516A>G |
| 3 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_005264562.2 | 99.9% | 100% | 516A>G |
| 4 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_005264563.1 | 99.9% | 100% | 516A>G |
| 5 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_006712104.2 | 99.9% | 100% | 516A>G |
| 6 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_011533109.1 | 99.9% | 100% | 516A>G |
| 7 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_017004958.1 | 99.9% | 100% | 516A>G |
| 8 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_017004959.2 | 85.9% | 85.2% | (many diffs) |
| 9 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NM_001287528.1 | 84.8% | 84.9% | 516A>G;1797_1797delGins319 |
| 10 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_011533110.1 | 84.7% | 84.8% | 0_1ins321;195A>G |
| 11 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XM_006712105.4 | 84.4% | 81.7% | 516A>G;1723_1724ins73;1788_1789ins254 |
| 12 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | NR_109844.1 | 73.5% | (many diffs) | |
| 13 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939718.3 | 49.5% | (many diffs) | |
| 14 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939717.3 | 43% | (many diffs) | |
| 15 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_001738944.2 | 42.6% | (many diffs) | |
| 16 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_002959339.1 | 39.4% | (many diffs) | |
| 17 | human | 79745 | CLIP4 | CAP-Gly domain containing l... | XR_939719.3 | 32.2% | (many diffs) | |
| 18 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_030179.3 | 82.4% | 87.5% | (many diffs) |
| 19 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525143.3 | 82.4% | 87.5% | (many diffs) |
| 20 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525144.2 | 82.4% | 87.5% | (many diffs) |
| 21 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525145.3 | 82.4% | 87.5% | (many diffs) |
| 22 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525146.1 | 82.4% | 87.5% | (many diffs) |
| 23 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525148.3 | 77.7% | 82.6% | (many diffs) |
| 24 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525149.2 | 77.7% | 82.6% | (many diffs) |
| 25 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_001271484.1 | 70.1% | 74.1% | (many diffs) |
| 26 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | NM_175378.1 | 65.3% | 69.3% | (many diffs) |
| 27 | mouse | 78785 | Clip4 | CAP-GLY domain containing l... | XM_006525154.2 | 65.3% | 69.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2184
- ORF length:
- 2115
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCATAGAG GACCTTCCAG ATTTTCCATT AGAAGGAAAT CCTTTGTTTG 121 GAAGATACCC ATTTATATTT TCTGCTTCTG ATACCCCAGT TATCTTTTCC ATTTCTGCAG 181 CACCAATGCC TTCAGACTGT GAATTTTCTT TCTTTGATCC TAATGATGCA TCATGCCAGG 241 AAATTCTTTT TGATCCCAAA ACTTCAGTTT CAGAATTATT TGCCATTTTG AGACAGTGGG 301 TTCCTCAGGT CCAACAAAAC ATTGACATTA TTGGAAATGA GATTCTTAAG AGAGGTTGCA 361 ATGTGAATGA TAGAGATGGA TTGACAGATA TGACTCTTTT ACATTATACC TGCAAATCTG 421 GAGCTCATGG TATTGGTGAT GTGGAAACAG CTGTAAAATT TGCAACTCAG CTTATTGACC 481 TGGGAGCAGA CATTAGTTTG CGGAGTCGCT GGACAAACAT GAATGCTTTG CATTATGCTG 541 CTTATTTTGA TGTCCCTGAA CTTATAAGAG TGATTTTGAA AACGTCGAAA CCAAAAGATG 601 TGGATGCCAC TTGCAGTGAT TTTAATTTTG GAACAGCTTT GCATATTGCA GCATACAACT 661 TGTGTGCAGG TGCTGTGAAG TGCCTCTTGG AGCAGGGAGC AAATCCTGCA TTTAGGAATG 721 ACAAAGGACA GATCCCTGCT GATGTTGTTC CAGACCCAGT AGATATGCCG TTAGAGATGG 781 CTGACGCCGC AGCCACTGCT AAGGAAATCA AGCAGATGCT TCTAGATGCG GTGCCTCTGT 841 CATGTAACAT CTCAAAGGCC ATGCTCCCAA ATTATGATCA TGTCACTGGC AAGGCAATGC 901 TTACGTCACT TGGCCTGAAG TTGGGGGATC GTGTTGTTAT TGCAGGACAG AAGGTTGGTA 961 CATTAAGATT TTGTGGAACA ACTGAATTTG CAAGTGGGCA GTGGGCTGGC ATTGAACTGG 1021 ATGAACCAGA AGGAAAAAAT AATGGAAGTG TTGGAAAAGT CCAGTACTTT AAATGTGCCC 1081 CCAAGTATGG TATTTTTGCA CCTCTTTCAA AGATAAGTAA AGCAAAAGGT CGAAGGAAGA 1141 ATATAACACA CACTCCTTCT ACAAAAGCTG CTGTACCTCT CATCAGGTCC CAGAAAATTG 1201 ACGTAGCTCA TGTGACGTCA AAAGTAAATA CTGGATTAAT GACATCAAAA AAAGATAGTG 1261 CTTCTGAGTC AACACTTTCA TTGCCTCCTG GTGAAGAACT TAAAACTGTG ACAGAGAAAG 1321 ATGTTGCCCT GCTTGGATCT GTCAGCAGCT GCTCCTCTAC ATCTTCTTTG GAACACAGAC 1381 AGAGCTACCC CAAGAAACAG AATGCAATCA GCAGTAACAA GAAGACAATG AGCAAAAGCC 1441 CTTCCCTTTC ATCCAGAGCC AGTGCTGGTT TGAATTCCTC AGCAACATCT ACAGCAAATA 1501 ATAGCCGTTG CGAGGGGGAA CTCCGCCTCG GAGAGAGAGT GTTAGTGGTA GGACAGAGAC 1561 TGGGCACCAT TAGGTTCTTT GGGACAACAA ACTTCGCTCC AGGATATTGG TATGGTATAG 1621 AGCTTGAAAA ACCCCATGGC AAGAATGATG GTTCAGTTGG AGGTGTGCAG TATTTTAGCT 1681 GTTCTCCAAG ATATGGAATA TTTGCTCCCC CATCCAGGGT GCAAAGAGTA ACAGATTCCC 1741 TGGATACCCT TTCAGAAATT TCTTCAAATA AACAGAACCA TTCTTATCCT GGTTTTAGGA 1801 GAAGTTTTAG CACAACTTCT GCTTCTTCCC AAAAGGAGAT TAACAGAAGA AATGCTTTTT 1861 CCAAATCGAA AGCTGCTTTG CGTCGCAGTT GGAGCAGCAC CCCCACCGCA GGTGGCATTG 1921 AAGGGAGCGT GAAGCTGCAC GAGGGGTCTC AGGTCCTGCT CACGAGCTCC AATGAGATGG 1981 GTACTGTTAG GTATGTGGGC CCCACTGACT TTGCTTCAGG TATCTGGCTT GGACTTGAGC 2041 TCCGAAGCGC CAAGGGAAAA AATGATGGGT CAGTGGGTGA CAAGCGCTAT TTCACCTGTA 2101 AGCCGAACCA TGGAGTCTTA GTTCGACCGA GCAGAGTGAC CTATCGGGGA ATTAATGGGT 2161 CAAAACTTGT GGATGAGAAT TGTTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 2221 agcattgctt atcaatttgt tgcaacgaac