Transcript: Human NM_024692.6

Homo sapiens CAP-Gly domain containing linker protein family member 4 (CLIP4), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
CLIP4 (79745)
Length:
4299
CDS:
267..2384

Additional Resources:

NCBI RefSeq record:
NM_024692.6
NBCI Gene record:
CLIP4 (79745)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_024692.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000135332 CTATTTCACCTGTAAGCCGAA pLKO.1 2285 CDS 100% 2.160 3.024 N CLIP4 n/a
2 TRCN0000138676 GCTGGCATTGAACTGGATGAA pLKO.1 1203 CDS 100% 4.950 3.960 N CLIP4 n/a
3 TRCN0000135047 CCTGGGATATGAGAAACATTT pLKO.1 3329 3UTR 100% 13.200 9.240 N CLIP4 n/a
4 TRCN0000135937 GCTTGCCTTGTGCTTAGAAAT pLKO.1 3748 3UTR 100% 13.200 9.240 N CLIP4 n/a
5 TRCN0000136223 GCCTGTTACAAAGCTACAGAA pLKO.1 3510 3UTR 100% 4.950 3.465 N CLIP4 n/a
6 TRCN0000138925 GCCCTTTCAGAAATGCCTCAT pLKO.1 2902 3UTR 100% 4.050 2.835 N CLIP4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024692.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08954 pDONR223 100% 99.9% 100% None 516A>G n/a
2 ccsbBroad304_08954 pLX_304 0% 99.9% 100% V5 516A>G n/a
3 TRCN0000467345 CTTTCTCAACCTAGGCCGGTAGAG pLX_317 14.7% 99.9% 100% V5 516A>G n/a
4 ccsbBroadEn_15989 pDONR223 0% 69.4% 69.5% None (many diffs) n/a
5 ccsbBroad304_15989 pLX_304 0% 69.4% 69.5% V5 (many diffs) n/a
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