Transcript: Human XM_011533110.1

PREDICTED: Homo sapiens CAP-Gly domain containing linker protein family member 4 (CLIP4), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CLIP4 (79745)
Length:
4121
CDS:
410..2206

Additional Resources:

NCBI RefSeq record:
XM_011533110.1
NBCI Gene record:
CLIP4 (79745)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011533110.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000135332 CTATTTCACCTGTAAGCCGAA pLKO.1 2107 CDS 100% 2.160 3.024 N CLIP4 n/a
2 TRCN0000138676 GCTGGCATTGAACTGGATGAA pLKO.1 1025 CDS 100% 4.950 3.960 N CLIP4 n/a
3 TRCN0000135047 CCTGGGATATGAGAAACATTT pLKO.1 3151 3UTR 100% 13.200 9.240 N CLIP4 n/a
4 TRCN0000135937 GCTTGCCTTGTGCTTAGAAAT pLKO.1 3570 3UTR 100% 13.200 9.240 N CLIP4 n/a
5 TRCN0000136223 GCCTGTTACAAAGCTACAGAA pLKO.1 3332 3UTR 100% 4.950 3.465 N CLIP4 n/a
6 TRCN0000138925 GCCCTTTCAGAAATGCCTCAT pLKO.1 2724 3UTR 100% 4.050 2.835 N CLIP4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011533110.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08954 pDONR223 100% 84.7% 84.8% None 0_1ins321;195A>G n/a
2 ccsbBroad304_08954 pLX_304 0% 84.7% 84.8% V5 0_1ins321;195A>G n/a
3 TRCN0000467345 CTTTCTCAACCTAGGCCGGTAGAG pLX_317 14.7% 84.7% 84.8% V5 0_1ins321;195A>G n/a
4 ccsbBroadEn_15989 pDONR223 0% 81.8% 82% None 195A>G;1211_1212insAGTTCT;1476_1794delinsG n/a
5 ccsbBroad304_15989 pLX_304 0% 81.8% 82% V5 195A>G;1211_1212insAGTTCT;1476_1794delinsG n/a
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