Construct: ORF ccsbBroadEn_09359
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018107.1_s300c1, BRDN0000398470
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPTE2 (93492)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_001141968.1 | 99.9% | 99.7% | 997A>G |
| 2 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_130785.3 | 91% | 86.5% | (many diffs) |
| 3 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_001290224.1 | 80.6% | 67.8% | (many diffs) |
| 4 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_199254.2 | 78.6% | 78.3% | 180_512del;1330A>G |
| 5 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073486.1 | 73.9% | (many diffs) | |
| 6 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199260.3 | 72.7% | 63.1% | (many diffs) |
| 7 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199261.3 | 69.7% | 63.7% | (many diffs) |
| 8 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199259.3 | 69.2% | 62.8% | (many diffs) |
| 9 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073487.1 | 56.4% | (many diffs) | |
| 10 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073485.1 | 55.6% | (many diffs) | |
| 11 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_001271850.1 | 46.8% | 46.7% | 0_1ins654;343A>G |
| 12 | human | 644623 | TPTE2P2 | transmembrane phosphoinosit... | XR_001749878.2 | 41.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1302
- ORF length:
- 1233
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATGAAAGT CCACAGACAA ACGAATTTAA AGGAACAACC GAGGAGGCAC 121 CTGCGAAAGA AAGCCCACAC ACAAGTGAAT TTAAAGGAGC AGCCCTGGTG TCACCTATCA 181 GTAAAAGTAT GTTAGAACGA CTTTCCAAGT TTGAAGTTGA AGATGCTGAA AATGTTGCTT 241 CATATGAATG GACACATTTA GTTCGACTTC TACGACTTAT TATTCTGATA AGAATTTTTC 301 ATCTGCTTCA TCAAAAAAGA CAACTTGAAA AGCTGATGAG AAGGCTGGTT TCAGAAAACA 361 AAAGGCGATA CACAAGGGAT GGATTTGACC TAGACCTCAC TTACGTTACA GAACGTATTA 421 TTGCTATGTC ATTTCCATCT TCTGGAAGGC AGTCTTTCTA TAGAAATCCA ATTGAGGAAG 481 TTGTGCGGTT TCTAGATAAG AAACATCGAA ACCACTATCG AGTCTACAAT CTATGCAGTG 541 AAAGAGCTTA TGATCCTAAG CACTTCCATA ATAGGGTCAG TAGAATCATG ATTGATGATC 601 ATAATGTCCC CACTCTACAT GAGATGGTGG TTTTCACCAA GGAAGTAAAT GAGTGGATGG 661 CTCAAGATCT TGAAAACATC GTAGCGATTC ACTGTAAAGG AGGCAAAGGA AGAACCGGGA 721 CTATGGTTTG TGCCCTCCTT ATTGCCTCCG AAATATTTTT AACTGCCGAG GAAAGCCTAT 781 ATTATTTTGG AGAAAGGCGA ACCAATAAAA CCCACAGCAA TAAATTTCAG GGAGTAGAAA 841 CTCCTTCTCA GAATAGATAT GTTGGATATT TTGCACAAGT GAAACATCTC TACAACTGGA 901 ATCTCCCTCC AAGACGGATA CTCTTTATAA AAAGATTCAT TATTTATTCG ATTCGTGGTG 961 ATGTATGTGA TCTAAAAGTC CAAGTAGTAA TGGAGAAAAA GGTTGTCTTT TCCAGTACTT 1021 CATTAGGAAA TTGTTCGATA TTGCATGACA TTGAAACAGA CAAAGTATTA ATTAATGTAT 1081 ATGACGGTCC ACCTCTGTAT GATGATGTGA AAGTGCAGTT TTTCTCTTCG AATCTTCCTA 1141 AATACTATGA CAATTGTCCA TTTTTCTTCT GGTTCAACAC GTCTTTTATT CAAAATAACA 1201 GGCTTTGTCT ACCAAGAAAT GAATTGGATA ATCCACATAA ACAAAAAGCA TGGAAAATTT 1261 ATCCACCAGA ATTTGCTGTG GAGATACTTT TTGGCGAGAA ATTGCCAACT TTCTTGTACA 1321 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac