Construct: ORF ccsbBroadEn_09529
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007439.1_s300c1, BRDN0000393147
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC66A3 (130814)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130814 | SLC66A3 | solute carrier family 66 me... | NM_152391.5 | 99.8% | 100% | 264G>T |
| 2 | human | 130814 | SLC66A3 | solute carrier family 66 me... | NM_001282710.1 | 92.9% | 93% | 264G>T;472_473ins42 |
| 3 | human | 130814 | SLC66A3 | solute carrier family 66 me... | XM_011510315.2 | 60.1% | 58.4% | (many diffs) |
| 4 | human | 130814 | SLC66A3 | solute carrier family 66 me... | NM_001282711.2 | 58.1% | 58.4% | 264G>T;354_357delGCAA;360_361ins250 |
| 5 | human | 130814 | SLC66A3 | solute carrier family 66 me... | NM_001282712.2 | 50% | 49% | (many diffs) |
| 6 | human | 130814 | SLC66A3 | solute carrier family 66 me... | NR_104231.2 | 33.7% | (many diffs) | |
| 7 | human | 130814 | SLC66A3 | solute carrier family 66 me... | XR_001738633.1 | 31.3% | (many diffs) | |
| 8 | human | 130814 | SLC66A3 | solute carrier family 66 me... | XR_001738632.2 | 13.7% | (many diffs) | |
| 9 | mouse | 217430 | Pqlc3 | PQ loop repeat containing | NM_172574.2 | 83% | 85.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCGGCGCTG CTGGGGCTGT GTAACTGGAG CACGCTGGGC GTGTGCGCCG 121 CGCTGAAGCT GCCGCAGATC TCCGCTGTGC TAGCGGCGCG CAGCGCGCGG GGCCTCAGCC 181 TTCCGAGTTT ACTTCTGGAG CTGGCAGGAT TCCTGGTGTT TCTGCGGTAC CAGTGTTACT 241 ATGGGTATCC GCCGCTGACC TACCTGGAGT ACCCCATCCT CATCGCGCAA GATGTCATCC 301 TCCTGCTCTG TATCTTTCAT TTTAACGGTA ACGTGAAGCA GGCCACTCCT TACATCGCTG 361 TATTGGTGTC TTCTTGGTTC ATCCTTGCCC TGCAGAAGTG GATCATAGAC CTGGCCATGA 421 ATCTATGTAC TTTCATCAGC GCGGCCAGTA AGTTTGCACA GCTCCAGTGT CTGTGGAAGA 481 CGAGAGACTC AGGAACTGTG AGTGCGCTGA CTTGGAGCCT CTCTTCCTAT ACCTGTGCAA 541 CAAGAATAAT CACAACCTTA ATGACCACCA ATGATTTTAC AATTCTTCTA CGTTTTGTGA 601 TCATGCTGGC TTTAAATATA TGGGTAACAG TGACAGTACT TCGCTACCGG AAGACCGCTA 661 TAAAGGCTGA ATGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 721 caatttgttg caacgaac