Construct: ORF ccsbBroadEn_09557

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017041.1_s300c1, BRDN0000391383
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STXBP5 (134957)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 134957 STXBP5 syntaxin binding protein 5 NM_139244.4 99.9% 100% 3285A>G
2 human 134957 STXBP5 syntaxin binding protein 5 XM_006715339.3 98.2% 98.2% 2146_2205del;3345A>G
3 human 134957 STXBP5 syntaxin binding protein 5 NM_001127715.2 96.8% 96.8% 2146_2253del;3393A>G
4 human 134957 STXBP5 syntaxin binding protein 5 XM_017010267.1 78.8% 78.8% (many diffs)
5 human 134957 STXBP5 syntaxin binding protein 5 XM_011535453.1 69.2% 69.2% 0_1ins987;1159_1218del;2358A>G
6 human 134957 STXBP5 syntaxin binding protein 5 XM_017010268.2 65.5% 62.8% (many diffs)
7 human 134957 STXBP5 syntaxin binding protein 5 XR_245504.2 64.8% 1_349del;2495_2557del;2850_2851ins907
8 human 134957 STXBP5 syntaxin binding protein 5 XR_001743163.2 40.8% (many diffs)
9 human 134957 STXBP5 syntaxin binding protein 5 XR_002956261.1 38.8% (many diffs)
10 human 134957 STXBP5 syntaxin binding protein 5 XR_245502.3 34.8% (many diffs)
11 mouse 78808 Stxbp5 syntaxin binding protein 5 ... NM_001081344.2 88.8% 97% (many diffs)
12 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_006512928.2 87.4% 95.5% (many diffs)
13 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_006512927.3 87.3% 95.3% (many diffs)
14 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_006512926.3 86.1% 94% (many diffs)
15 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_011243236.2 60.2% 62.7% (many diffs)
16 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_011243237.2 59.6% 63.8% (many diffs)
17 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XM_011243238.2 59.2% 63.3% (many diffs)
18 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XR_380096.3 51.3% (many diffs)
19 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XR_380094.2 50.5% (many diffs)
20 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XR_380092.2 49.9% (many diffs)
21 mouse 78808 Stxbp5 syntaxin binding protein 5 ... XR_001779636.1 39.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3414
ORF length:
3345
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG
61TTGGCACCAT GAGGAAATTC AACATCAGGA AGGTGCTGGA CGGCCTGACC GCCGGCTCGT
121CCTCGGCGTC GCAGCAGCAA CAGCAGCAGC ATCCGCCTGG GAACCGGGAG CCGGAGATCC
181AGGAAACGCT CCAGTCCGAG CACTTTCAGC TCTGCAAGAC TGTTCGCCAT GGATTTCCCT
241ATCAACCCTC AGCCCTGGCC TTTGATCCTG TACAGAAGAT CCTGGCAGTG GGAACTCAGA
301CTGGTGCTTT AAGGCTCTTT GGTCGTCCAG GAGTAGAATG TTATTGCCAG CATGACAGTG
361GAGCTGCAGT AATCCAGCTC CAGTTCCTGA TTAATGAGGG AGCGCTTGTG AGTGCCTTGG
421CTGATGACAC CTTACACTTA TGGAATTTAC GTCAGAAGAG GCCTGCCATA CTACATTCGC
481TTAAATTTTG CAGAGAAAGG GTTACATTTT GCCATCTGCC TTTCCAGAGT AAGTGGCTCT
541ATGTGGGCAC TGAACGAGGT AATATACATA TTGTCAATGT GGAGTCCTTC ACACTCTCAG
601GCTACGTCAT TATGTGGAAT AAAGCCATTG AACTGTCATC TAAATCTCAC CCAGGACCTG
661TGGTCCATAT AAGTGATAAT CCAATGGACG AGGGAAAGCT TTTGATTGGC TTTGAATCTG
721GAACAGTAGT TTTATGGGAC CTCAAATCAA AGAAAGCCGA CTACAGATAC ACATATGATG
781AGGCTATCCA CTCTGTTGCT TGGCATCATG AAGGAAAACA ATTTATTTGC AGTCATTCAG
841ATGGCACCTT GACTATATGG AATGTAAGGT CCCCTGCTAA ACCAGTACAG ACAATCACTC
901CACATGGAAA ACAGTTAAAG GATGGGAAGA AGCCAGAACC ATGCAAACCT ATCCTCAAGG
961TGGAATTCAA AACGACTAGA TCTGGGGAGC CTTTTATTAT TTTATCAGGA GGTTTGTCAT
1021ATGATACTGT AGGAAGAAGA CCTTGCTTAA CAGTGATGCA TGGGAAAAGC ACTGCTGTGC
1081TAGAAATGGA CTATTCAATT GTTGATTTTC TAACGCTGTG TGAAACACCA TACCCAAATG
1141ATTTTCAAGA ACCATATGCT GTGGTTGTTC TTCTAGAAAA GGATTTAGTA CTTATAGACC
1201TTGCACAAAA TGGATATCCT ATATTTGAAA ATCCCTACCC TTTGAGTATA CATGAGTCCC
1261CTGTTACATG TTGCGAATAT TTTGCGGATT GTCCTGTGGA CCTTATTCCT GCACTTTATT
1321CTGTTGGAGC TAGACAGAAA CGTCAAGGTT ACAGCAAAAA GGAATGGCCC ATCAACGGAG
1381GTAATTGGGG CTTGGGTGCT CAAAGTTACC CAGAAATAAT TATTACAGGG CATGCTGATG
1441GGTCAGTTAA GTTCTGGGAT GCTTCTGCAA TAACTCTACA AGTATTATAT AAGCTAAAGA
1501CATCTAAAGT ATTTGAAAAG TCAAGAAATA AAGATGACAG GCCAAACACA GACATTGTAG
1561ATGAAGATCC ATATGCCATT CAGATCATCT CCTGGTGTCC AGAAAGTAGA ATGCTGTGCA
1621TCGCTGGAGT TTCAGCTCAT GTCATTATTT ATAGATTCAG CAAGCAGGAA GTAATCACAG
1681AAGTCATTCC GATGCTTGAA GTTCGATTAT TATATGAGAT AAATGATGTG GAAACTCCGG
1741AGGGTGAGCA GCCACCACCT TTGCCAACAC CCGTGGGAGG GTCCAACCCT CAGCCCATCC
1801CTCCTCAGTC TCATCCATCT ACCAGTAGCA GTTCATCTGA TGGGCTTCGT GATAATGTAC
1861CTTGTTTAAA AGTTAAAAAC TCACCACTTA AACAGTCTCC AGGTTATCAA ACAGAACTAG
1921TTATTCAGTT GGTTTGGGTG GGTGGAGAAC CACCACAACA AATAACCAGC CTGGCAGTCA
1981ATTCTTCCTA TGGACTGGTG GTTTTTGGCA ATTGCAATGG CATTGCTATG GTTGACTACC
2041TCCAGAAAGC AGTGCTGCTC AACCTGGGCA CTATTGAATT ATATGGCTCT AATGATCCTT
2101ATCGGAGAGA ACCCCGATCT CCTCGTAAAT CTCGACAGCC TTCAGGAGCC GGTCTGTGTG
2161ATATTAGTGA AGGGACTGTT GTTCCAGAGG ATCGCTGCAA ATCTCCAACC TCTGCAAAGA
2221TGTCAAGGAA GTTAAGCTTA CCTACTGACC TAAAGCCTGA TTTAGATGTA AAGGATAACT
2281CCTTTAGCCG ATCACGGAGT TCAAGTGTAA CAAGCATTGA CAAAGAATCC CGAGAAGCGA
2341TCTCCGCTCT TCATTTCTGT GAAACGTTTA CTCGAAAGAC GGACTCGTCC CCTTCCCCTT
2401GTCTATGGGT TGGAACAACG CTAGGAACAG TGCTTGTCAT TGCACTGAAC CTTCCCCCAG
2461GGGGAGAGCA AAGACTTCTT CAGCCAGTAA TTGTGTCTCC AAGTGGTACT ATATTGAGGT
2521TAAAAGGTGC AATCTTGAGA ATGGCATTTC TGGATACCAC AGGCTGCTTA ATACCACCTG
2581CGTATGAACC CTGGAGAGAG CACAATGTTC CTGAAGAAAA AGACGAAAAG GAGAAATTGA
2641AAAAACGGCG GCCTGTCTCA GTATCCCCCT CCTCTTCTCA GGAAATTAGT GAAAACCAGT
2701ATGCAGTGAT ATGTTCTGAA AAGCAAGCAA AAGTAATCTC ACTGCCAACC CAGAACTGTG
2761CTTATAAGCA AAATATTACA GAGACCTCGT TTGTGCTTCG TGGAGATATT GTAGCATTGA
2821GTAACAGTAT CTGCCTTGCC TGTTTCTGTG CCAATGGACA TATAATGACT TTTAGTTTGC
2881CAAGTTTAAG ACCTCTGTTG GATGTGTATT ACTTGCCCCT TACCAATATG CGGATAGCCA
2941GAACGTTCTG CTTTACCAAC AATGGACAAG CATTATACCT TGTTTCACCT ACAGAAATCC
3001AGAGACTTAC TTATAGTCAA GAGACCTGTG AAAATCTTCA GGAAATGTTG GGTGAACTCT
3061TCACTCCTGT AGAAACACCT GAAGCACCAA ACAGGGGATT CTTTAAAGGC TTATTTGGAG
3121GTGGTGCACA ATCTCTTGAC AGAGAAGAAC TATTTGGAGA ATCGTCCTCA GGAAAGGCTT
3181CAAGGAGCCT TGCACAGCAT ATTCCTGGCC CTGGTGGCAT TGAAGGCGTA AAAGGGGCAG
3241CATCTGGAGT TGTTGGTGAA TTAGCACGAG CCAGGCTGGC ACTAGATGAA AGAGGGCAGA
3301AACTTGGCGA TCTGGAAGAA AGAACTGCGG CCATGTTATC AAGTGCAGAG TCGTTTTCTA
3361AACATGCTCA TGAGATTATG TTGAAATACA AAGATAAGAA GTGGTACCAG TTCTTGCCAA
3421CTTTTTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)