Construct: ORF ccsbBroadEn_09811

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015031.1_s300c1, BRDN0000386046
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TVP23C (201158)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 201158 TVP23C trans-golgi network vesicle... NM_145301.2 99.8% 99.6% 585G>T
2 human 51030 TVP23B trans-golgi network vesicle... NM_016078.6 66.1% 59% (many diffs)
3 human 201158 TVP23C trans-golgi network vesicle... NM_001135036.1 64.1% 58.2% (many diffs)
4 human 100533496 TVP23C-CDRT4 TVP23C-CDRT4 readthrough NM_001204478.2 57.9% 54.9% (many diffs)
5 human 51030 TVP23B trans-golgi network vesicle... NM_001316924.2 54.9% 54.3% (many diffs)
6 human 51030 TVP23B trans-golgi network vesicle... NM_001316919.1 43.6% 36.5% (many diffs)
7 human 51030 TVP23B trans-golgi network vesicle... NM_001316920.1 43.6% 36.5% (many diffs)
8 human 51030 TVP23B trans-golgi network vesicle... NM_001316921.1 43.6% 36.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
894
ORF length:
828
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GCAGCAGGAT AGTAATGATG ACACTGAAGA TGTTTCACTG TTTGATGCGG
121AAGAGGAGAC GACTAATAGA CCAAGAAAAG CCAAAATCAG ACATCCAGTA GCATCGTTTT
181TCCACTTATT CTTTCGAGTC AGTGCAATCA TCGTCTGTCT TCTCTGTGAG TTGCTCAGCA
241GCAGCTTTAT TACCTGTATG GTTACAATTA TCTTGTTGTT GTCGTGTGAC TTTTGGGCAG
301TGAAGAATGT CACAGGTAGA CTAATGGTTG GCCTACGTTG GTGGAATCAC ATTGATGAAG
361ATGGAAAGAG CCATTGGGTG TTTGAATCTA GAAAGGAGTC CTCTCAAGAG AATAAAACTG
421TGTCAGAGGC TGAATCAAGA ATCTTTTGGT TGGGACTTAT TGCCTGTTCA GTACTGTGGG
481TGATATTTGC CTTTAGTGCA CTCTTCTCCT TCACAGTAAA GTGGCTGAGA CGGTCTCGCC
541ACATTGCCCA GACTGGTCTG AAAGTCTTGG GCTCAAGAGA TCCTCCCGCT TCCGCCTTCC
601AAAGCGCTGG GATAACAGGC GTGAGCCGCT GCCCGGGCCA TCCCTCGAGT AAGTTTCATC
661AGGTAGACAT TAATTCTTTC ACGAGGATCA CGGATCGAGC TCTTTACTGG AAACCTGCGC
721CCCGCCTTAG TTCTCCACCT CTTCGTGCGG CTCCAGGCAA CTGCCAACAG ATGGCGCCCG
781CCCGCCTATT TCTCTCCTTG CGGCTTTGGG CCTGGAGGGG AGGTGGGGAG AGTCCCAATA
841GCAGAGGAAC TGGTGAGCCC GGGCCAAAAT TTCATCTGGC ATCCGGAATG CATTACCCAA
901CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)