Transcript: Human NM_001135036.1

Homo sapiens trans-golgi network vesicle protein 23 homolog C (TVP23C), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
TVP23C (201158)
Length:
4244
CDS:
184..795

Additional Resources:

NCBI RefSeq record:
NM_001135036.1
NBCI Gene record:
TVP23C (201158)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001135036.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150156 GAGTCCTCTCAAGAGAATAAA pLKO.1 514 CDS 100% 15.000 7.500 Y TVP23B n/a
2 TRCN0000134426 GAATGTCACAGGTAGACTAAT pLKO.1 423 CDS 100% 13.200 6.600 Y TVP23C n/a
3 TRCN0000131117 GTTGCTCAGCAGCAGCTTTAT pLKO.1 348 CDS 100% 13.200 6.600 Y TVP23B n/a
4 TRCN0000413596 TACGTTGGTGGAATCACATTG pLKO_005 452 CDS 100% 10.800 5.400 Y TVP23B n/a
5 TRCN0000147919 GACGACTAATAGACCAAGAAA pLKO.1 246 CDS 100% 5.625 2.813 Y TVP23B n/a
6 TRCN0000138106 GCACTCTTCTCCTTCACAGTA pLKO.1 616 CDS 100% 4.950 2.475 Y TVP23C n/a
7 TRCN0000127763 GCAGCAGCTTTATTACCTGTA pLKO.1 356 CDS 100% 4.050 2.025 Y TVP23B n/a
8 TRCN0000136688 GCAGCAGCTTTATTACCTGTA pLKO.1 356 CDS 100% 4.050 2.025 Y TVP23C n/a
9 TRCN0000127511 CAGTGAAGAATGTCACAGGTA pLKO.1 416 CDS 100% 2.640 1.320 Y TVP23B n/a
10 TRCN0000136799 CAGTGAAGAATGTCACAGGTA pLKO.1 416 CDS 100% 2.640 1.320 Y TVP23C n/a
11 TRCN0000137769 GCAGTGAAGAATGTCACAGGT pLKO.1 415 CDS 100% 2.640 1.320 Y TVP23C n/a
12 TRCN0000149371 GTTTCACTGTTTGATGCGGAA pLKO.1 220 CDS 100% 2.160 1.080 Y TVP23B n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1353 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1353 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001135036.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03181 pDONR223 100% 95% 92.8% None (many diffs) n/a
2 TRCN0000476923 CCCGGCCTAACCAGTGAGCTAGGA pLX_317 28.6% 95% 92.8% V5 (many diffs) n/a
3 ccsbBroadEn_09811 pDONR223 100% 64.1% 58.2% None (many diffs) n/a
4 ccsbBroad304_09811 pLX_304 0% 64.1% 58.2% V5 (many diffs) n/a
5 TRCN0000470249 ATAGCCCCCTTATCGTCAGGACCG pLX_317 15.2% 64.1% 58.2% V5 (many diffs) n/a
Download CSV