Transcript: Human NM_001316921.1

Homo sapiens trans-golgi network vesicle protein 23 homolog B (TVP23B), transcript variant 4, mRNA.

Source:
NCBI, updated 2018-07-01
Taxon:
Homo sapiens (human)
Gene:
TVP23B (51030)
Length:
2058
CDS:
487..912

Additional Resources:

NCBI RefSeq record:
NM_001316921.1
NBCI Gene record:
TVP23B (51030)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001316921.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426349 CATAGGTAATGGAGACCTTTG pLKO_005 1228 3UTR 100% 6.000 4.200 N TVP23B n/a
2 TRCN0000419796 TCAGTGCAATCATCGTCTATC pLKO_005 428 5UTR 100% 10.800 6.480 N TVP23B n/a
3 TRCN0000150156 GAGTCCTCTCAAGAGAATAAA pLKO.1 625 CDS 100% 15.000 7.500 Y TVP23B n/a
4 TRCN0000134426 GAATGTCACAGGTAGACTAAT pLKO.1 534 CDS 100% 13.200 6.600 Y TVP23C n/a
5 TRCN0000131117 GTTGCTCAGCAGCAGCTTTAT pLKO.1 459 5UTR 100% 13.200 6.600 Y TVP23B n/a
6 TRCN0000413596 TACGTTGGTGGAATCACATTG pLKO_005 563 CDS 100% 10.800 5.400 Y TVP23B n/a
7 TRCN0000147919 GACGACTAATAGACCAAGAAA pLKO.1 357 5UTR 100% 5.625 2.813 Y TVP23B n/a
8 TRCN0000127763 GCAGCAGCTTTATTACCTGTA pLKO.1 467 5UTR 100% 4.050 2.025 Y TVP23B n/a
9 TRCN0000136688 GCAGCAGCTTTATTACCTGTA pLKO.1 467 5UTR 100% 4.050 2.025 Y TVP23C n/a
10 TRCN0000127511 CAGTGAAGAATGTCACAGGTA pLKO.1 527 CDS 100% 2.640 1.320 Y TVP23B n/a
11 TRCN0000136799 CAGTGAAGAATGTCACAGGTA pLKO.1 527 CDS 100% 2.640 1.320 Y TVP23C n/a
12 TRCN0000137769 GCAGTGAAGAATGTCACAGGT pLKO.1 526 CDS 100% 2.640 1.320 Y TVP23C n/a
13 TRCN0000149371 GTTTCACTGTTTGATGCGGAA pLKO.1 331 5UTR 100% 2.160 1.080 Y TVP23B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001316921.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03181 pDONR223 100% 68.7% 68.7% None 0_1ins192 n/a
2 TRCN0000476923 CCCGGCCTAACCAGTGAGCTAGGA pLX_317 28.6% 68.7% 68.7% V5 0_1ins192 n/a
3 ccsbBroadEn_09811 pDONR223 100% 43.6% 36.5% None (many diffs) n/a
4 ccsbBroad304_09811 pLX_304 0% 43.6% 36.5% V5 (many diffs) n/a
5 TRCN0000470249 ATAGCCCCCTTATCGTCAGGACCG pLX_317 15.2% 43.6% 36.5% V5 (many diffs) n/a
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