Construct: ORF ccsbBroadEn_09966

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006799.1_s300c1, BRDN0000392991
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NBPF15 (284565)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284565 NBPF15 NBPF member 15 NM_001170755.2 99.9% 99.8% 1335G>A;1430A>C
2 human 284565 NBPF15 NBPF member 15 NM_173638.4 99.9% 99.8% 1335G>A;1430A>C
3 human 84224 NBPF3 NBPF member 3 NM_001330381.2 77.9% 69.1% (many diffs)
4 human 84224 NBPF3 NBPF member 3 XM_006710958.1 77.9% 69.1% (many diffs)
5 human 84224 NBPF3 NBPF member 3 XM_006710959.2 77.9% 69.1% (many diffs)
6 human 84224 NBPF3 NBPF member 3 XM_011542276.1 77.9% 69.1% (many diffs)
7 human 84224 NBPF3 NBPF member 3 XM_011542277.1 77.9% 69.1% (many diffs)
8 human 84224 NBPF3 NBPF member 3 XM_011542278.1 77.9% 69.1% (many diffs)
9 human 84224 NBPF3 NBPF member 3 XM_011542281.1 77.9% 69.1% (many diffs)
10 human 84224 NBPF3 NBPF member 3 XM_017002499.2 77.9% 69.1% (many diffs)
11 human 84224 NBPF3 NBPF member 3 XM_024450188.1 77.9% 69.1% (many diffs)
12 human 84224 NBPF3 NBPF member 3 XM_024450190.1 77.9% 69.1% (many diffs)
13 human 84224 NBPF3 NBPF member 3 XM_017002500.1 73% 65% (many diffs)
14 human 84224 NBPF3 NBPF member 3 XM_017002501.1 73% 65% (many diffs)
15 human 84224 NBPF3 NBPF member 3 XM_017002502.1 73% 65% (many diffs)
16 human 84224 NBPF3 NBPF member 3 NM_001256417.3 73% 61.5% (many diffs)
17 human 84224 NBPF3 NBPF member 3 NM_032264.5 71.9% 63.7% (many diffs)
18 human 400818 NBPF9 NBPF member 9 NM_001037675.3 69.8% 68.6% (many diffs)
19 human 728841 NBPF8 NBPF member 8 NM_001037501.3 69.7% 68.3% (many diffs)
20 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_024452498.1 69.1% 67.2% (many diffs)
21 human 84224 NBPF3 NBPF member 3 XM_006710957.1 67.4% 60% (many diffs)
22 human 84224 NBPF3 NBPF member 3 NM_001256416.3 65.1% 58% (many diffs)
23 human 200030 NBPF11 NBPF member 11 NM_001101663.4 61.5% 53% (many diffs)
24 human 400818 NBPF9 NBPF member 9 NM_001277444.1 59.3% 58.5% (many diffs)
25 human 200030 NBPF11 NBPF member 11 NM_183372.6 58.2% 50.2% (many diffs)
26 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_017030107.2 56.3% 27% (many diffs)
27 human 149013 NBPF12 NBPF member 12 XM_024453443.1 55% 53.6% (many diffs)
28 human 55672 NBPF1 NBPF member 1 NM_017940.6 53.7% 52.2% (many diffs)
29 human 101929780 NBPF25P NBPF member 25, pseudogene NR_104217.1 51.5% (many diffs)
30 human 200030 NBPF11 NBPF member 11 XM_024453858.1 49.7% 45.8% (many diffs)
31 human 101060684 NBPF26 NBPF member 26 NM_001351372.1 49.4% 48.3% (many diffs)
32 human 149013 NBPF12 NBPF member 12 NM_001278141.1 44.8% 43.6% (many diffs)
33 human 200030 NBPF11 NBPF member 11 XR_002959662.1 38.2% (many diffs)
34 human 200030 NBPF11 NBPF member 11 XR_002959669.1 38% (many diffs)
35 human 343505 NBPF7 NBPF member 7 XM_017001186.1 37% 28.9% (many diffs)
36 human 200030 NBPF11 NBPF member 11 XR_002959670.1 36.3% (many diffs)
37 human 200030 NBPF11 NBPF member 11 NR_110864.2 35.2% (many diffs)
38 human 84224 NBPF3 NBPF member 3 NR_046176.3 33.4% (many diffs)
39 human 200030 NBPF11 NBPF member 11 NR_046188.4 32.8% (many diffs)
40 human 200030 NBPF11 NBPF member 11 XM_024453859.1 32% 29.2% (many diffs)
41 human 728841 NBPF8 NBPF member 8 NR_102405.2 24.8% (many diffs)
42 human 728841 NBPF8 NBPF member 8 NR_102404.2 24% (many diffs)
43 human 25832 NBPF14 NBPF member 14 NM_015383.2 22.7% 21.3% (many diffs)
44 human 100132406 NBPF10 NBPF member 10 NM_001039703.6 17.6% 16.6% (many diffs)
45 human 100132406 NBPF10 NBPF member 10 NM_001302371.3 16.8% 15.9% (many diffs)
46 human 101060226 NBPF19 NBPF member 19 NM_001351365.1 16.6% 15.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2076
ORF length:
2010
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GGTATCAGCC GGCCCTTTGT CCAGCGAGAA GGCAGAGATG AACATTCTAG
121AAATCAATGA GAAATTGCGC CCCCAGTTGG CAGAGAAGAA ACAGCAGTTC AGAAACCTCA
181AAGAGAAATG TTTTCTAACT CAACTGGCCG GCTTCCTGGC CAACCGACAG AAGAAATACA
241AATATGAAGA GTGCAAAGAT CTCATAAAAT TTATGCTGAG GAATGAGCGA CAGTTCAAGG
301AGGAGAAGCT TGCAGAGCAG CTCAAGCAAG CTGAGGAGCT CAGGCAATAT AAAGTCCTGG
361TTCACGCTCA GGAACGAGAG CTGACCCAGT TAAGGGAGAA GTTACGGGAA GGGAGAGATG
421CCTCCCGCTC ATTGAATGAG CATCTCCAGG CCCTCCTCAC TCCGGATGAG CCGGACAAGT
481CCCAGGGGCA GGACCTCCAA GAACAGCTGG CTGAGGGGTG TAGACTGACA CAGCACCTTG
541TCCAAAAGCT CAGCCCAGAA AATGACAACG ATGACGATGA AGATGTTCAA GTTGAGGTGG
601CTGAGAAAGT GCAGAAATCG TCTGCCCCCA GGGAGATGCA GAAGGCTGAA GAAAAGGAAG
661TCCCTGAGGA CTCACTGGAG GAATGTGCCA TCACTTGTTC AAATAGCCAT GGCCCTTATG
721ACTCCAACCA GCCACATAAG AAAACCAAAA TCACATTTGA GGAAGACAAA GTCGACTCAA
781CTCTCATTGG CTCATCCTCT CATGTTGAAT GGGAGGATGC TGTACACATT ATTCCAGAAA
841ATGAAAGTGA TGATGAGGAA GAGGAAGAAA AAGGGCCAGT GTCTCCCAGG AATCTGCAGG
901AGTCTGAAGA GGAGGAAGTC CCCCAGGAGT CCTGGGATGA AGGTTATTCG ACTCTCTCAA
961TTCCTCCTGA AATGTTGGCC TCGTACCAGT CTTACAGCAG CACATTTCAC TCATTAGAGG
1021AACAGCAAGT CTGCATGGCT GTTGACATAG GCAGACATCG GTGGGATCAA GTGAAAAAGG
1081AGGACCAAGA GGCAACAGGT CCCAGGCTCA GCAGGGAGCT GCTGGATGAG AAAGAGCCTG
1141AAGTCTTGCA GGACTCACTG GATAGATGTT ATTCAACTCC TTCAGGTTGT CTTGAACTGA
1201CTGACTCATG CCAGCCCTAC AGAAGTGCCT TTTACGTATT GGAGCAACAG CGTGTTGGCT
1261TGGCTATTGA CATGGATGAA ATTGAAAAGT ACCAAGAAGT GGAAGAAGAC CAAGACCCAT
1321CATGCCCCAG GCTCAGCAGG GAGCTGCTGG ATGAGAAAGA GCCTGAAGTC TTGCAGGACT
1381CACTGGATAG ATGTTATTCA ACTCCTTCAG ATTATCTTGA ACTGCCTGAC TTAGGCCAGC
1441CCTACAGCAG TGCTGTTTAC TCATTGGAGG AACAGTACCT TGGCTTGGCT CTTGCCGTGG
1501ACAGAATTAA AAAGGACCAA GAAGAGGAAG AAGACCAAGG CCCACCATGC CCCAGGCTCA
1561GCAGGGAGCT GCTGGAGGTA GTAGAGCCTG AAGTCTTGCA GGACTCACTG GATAGATGTT
1621ATTCAACTCC TTCCAGTTGT CTTGAACAGC CTGACTCCTG CCAGCCCTAT GGAAGTTCCT
1681TTTATGCATT GGAGGAAAAA CATGTTGGCT TTTCTCTTGA CGTGGGAGAA ATTGAAAAGA
1741AGGGGAAGGG GAAGAAAAGA AGGGGAAGAA GATCAAAGAA GAAAAGAAGA AGGGGAAGAA
1801AAGAAGGGGA AGATGACAAC CCACCATGCC CCAGGCTCTA CGGCGTGCTG ATGGAAGTGG
1861AAGAGCCTGA AGTCTTACAG GACTCACTGG ATAGATGTTA TTCGACTCCG TCAATGTACT
1921TTGAACAACC TGACTCATTC CAGCACTACA GAAGTGTGTT TTACTCATTT GAGGAAGAGC
1981ATATCAGCTT CGCCCTTTAC GTGGACAATA GGTTTTTTAC TTTGACGGTG ACAAGTCTCC
2041ACCTGGTGTT CCAGATGGGA GTCATATTCC CACAATACCC AACTTTCTTG TACAAAGTtg
2101gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)