Construct: ORF ccsbBroadEn_10407

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017882.1_s300c1, BRDN0000397756
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PI4KAP1 (728233)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375133 PI4KAP2 phosphatidylinositol 4-kina... NR_003700.1 34.3% (many diffs)
2 human 728233 PI4KAP1 phosphatidylinositol 4-kina... NR_003563.1 33.3% 1_30del;817_2360del
3 human 5297 PI4KA phosphatidylinositol 4-kina... XM_017028830.1 17.4% 17.2% (many diffs)
4 human 5297 PI4KA phosphatidylinositol 4-kina... XM_005261635.1 13.8% 13.7% (many diffs)
5 human 5297 PI4KA phosphatidylinositol 4-kina... NM_001362862.1 12.3% 12.2% (many diffs)
6 human 5297 PI4KA phosphatidylinositol 4-kina... NM_001362863.1 12.3% 12.1% (many diffs)
7 human 5297 PI4KA phosphatidylinositol 4-kina... NM_058004.4 12.2% 12% (many diffs)
8 human 5297 PI4KA phosphatidylinositol 4-kina... XR_937868.1 11.6% (many diffs)
9 human 5297 PI4KA phosphatidylinositol 4-kina... XM_011530226.1 8.4% 8.4% (many diffs)
10 mouse 224020 Pi4ka phosphatidylinositol 4-kina... XM_006522037.2 19.7% 21.3% (many diffs)
11 mouse 224020 Pi4ka phosphatidylinositol 4-kina... NM_001001983.2 11.3% 12.2% (many diffs)
12 mouse 224020 Pi4ka phosphatidylinositol 4-kina... XM_006522034.1 10.9% 11.8% (many diffs)
13 mouse 224020 Pi4ka phosphatidylinositol 4-kina... XM_006522036.3 7.7% 8.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
852
ORF length:
786
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGTGGAGCAG AAATTTGGCC TGTTTTCTGC TGAGATAAAG GAAGCAGACC
121CCCTGGCTGC CTCGGAAGCA AGTCAACCCA AACCCTGTCC CCCCGAAGTG ACCCCCCACT
181ACATCTGGAT CGACTTCCTG GTGCAGCGGT TTGAGATCGC CAAGTACTGC AGCTCTGACC
241AAGTGGAGAT CTTCTCCAGC CTGCTGCAGC GCTCCATGTC CCTGAACATC GGTGGGGCCA
301AGGGGAGCAT GAACCGGCAT GTGGCGGCCA TCGGGCCCCG CTTCAAGCTG CTGACCCTGG
361GGCTGTCCCT CCTGCATGCC GATGTGGTTC CAAATGCAAC CATCCGCAAT GTGCTTCGCG
421AGAAGATCTA CTCCACTGCC TTTGACTACT TCAGCTGTCC CCCAAAGTTT CCTACTCAAG
481GAGAGAAGCG GCTGCGTGAA GACATAAGCA TCATGATTAA ATTTTGGACC GCCATGTTCT
541CAGATAAGAA GTACCTGACC GCCAGCCAGC TTGTTCCCCC AGCTGACATC GGCGACCTCC
601GGGAGCAGTT AGTAGAGGAG AACACAGGCT CCTTGTCGGG CCCAGCGAAG GACTTTTACC
661AGCGGGAGTT TGATTTCTTT AACAAGATCA CCAACGTGTC GGCTGTCATC AAGCCCTACC
721CTAAAGGCGA CCAGAGAAAG AAGGCTTGTC TGTCGGCCCT GTCTGAAGTG ACGGTGCAGC
781CAGGCTGCTC CCTGCCCAGC AACCCTGAAG CCATTGTGCT GGACGTCGAC TACAAGTCTG
841GGACCCCGAT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
901caatttgttg caacgaac

Download FASTA (ORF) (Full)