Construct: ORF ccsbBroadEn_10493
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004557.1_s300c1, BRDN0000388076
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF137P (7696)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 107987264 | LOC107987264 | putative zinc finger protei... | XR_002958390.1 | 52% | (many diffs) | |
| 2 | human | 344787 | ZNF860 | zinc finger protein 860 | NM_001137674.3 | 26.9% | 20% | (many diffs) |
| 3 | human | 344787 | ZNF860 | zinc finger protein 860 | XM_017006299.1 | 26.9% | 20% | (many diffs) |
| 4 | human | 7696 | ZNF137P | zinc finger protein 137, ps... | NR_023311.1 | 24.8% | (many diffs) | |
| 5 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 18.1% | (many diffs) | |
| 6 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 18% | (many diffs) | |
| 7 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 15.3% | (many diffs) | |
| 8 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 15.2% | (many diffs) | |
| 9 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 14.3% | (many diffs) | |
| 10 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 12.6% | (many diffs) | |
| 11 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 12% | (many diffs) | |
| 12 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 11.6% | (many diffs) | |
| 13 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 11.3% | (many diffs) | |
| 14 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 11.3% | (many diffs) | |
| 15 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 10.9% | (many diffs) | |
| 16 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 10.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 690
- ORF length:
- 621
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATGTGGCA AGGTTTTTAG TAGAAAAGCA CACCTTGCAT GTCATCATAG 121 ACTTCATACT GTCTAAGGTT TCTAATCAAC AATCAAACCT TGCACAACAT CAGAGAGTTT 181 ATACTGGAGA GAAACCTTAC AAGTGTAATG AGTGGGGCAA AGCCTTAAGT GGGAAGTCGT 241 CACTTTTTTA TCATCAAGCA ATCCATGGTG TAGGGAAACT TTGCAAATGT AATGATTGTC 301 ACAAAGTCTT CAGTAATGCT ACAACCATTG CAAATCACTG GAGAATCCGT AATGAAGACA 361 GATCTTACAA GTGTAATAAA TGTGGTAAAA TTTTCAGACA TCAATCATAT CTTGCAGTTT 421 ATCAGCGAAC TCATACTGGA GAGAAACCTT ACAAATATCA TGACTGTGGC AAGGTCTTCA 481 GTCAAGCTTC ATCCTATGCA AAACATAGGA GAATTCATAC AGGAGAGAAA CCTCACAAGT 541 GTGATGATTG TGGCAAAGTC TTGACTTCAC GTTCACACCT CATTAGACAT CAGAGAATCC 601 ATACTGGACA TAAATCTTAC AAATGTCTTA AGTGTGGCAA GGTCTTCAGT CTGTGGGCAC 661 TCCATGCAGA ACATCAGAAA ATTCATTTTT TGCCAACTTT CTTGTACAAA GTtggcatta 721 taagaaagca ttgcttatca atttgttgca acgaac