Construct: ORF ccsbBroadEn_10758
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010903.1_s300c1, BRDN0000386957
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTBP2 (1488)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001363508.2 | 99.9% | 99.8% | 1078G>A |
| 2 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001083914.3 | 85.3% | 82.2% | (many diffs) |
| 3 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290214.3 | 85.3% | 82.2% | (many diffs) |
| 4 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290215.3 | 85.3% | 82.2% | (many diffs) |
| 5 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321012.2 | 85.3% | 82.2% | (many diffs) |
| 6 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321013.2 | 85.3% | 82.2% | (many diffs) |
| 7 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321014.2 | 85.3% | 82.2% | (many diffs) |
| 8 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001329.4 | 85.3% | 82.2% | (many diffs) |
| 9 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269561.3 | 85.3% | 82.2% | (many diffs) |
| 10 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269564.3 | 85.3% | 82.2% | (many diffs) |
| 11 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269567.3 | 85.3% | 82.2% | (many diffs) |
| 12 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269568.5 | 85.3% | 82.2% | (many diffs) |
| 13 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269569.3 | 85.3% | 82.2% | (many diffs) |
| 14 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269571.3 | 85.3% | 82.2% | (many diffs) |
| 15 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269572.4 | 85.3% | 82.2% | (many diffs) |
| 16 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_006717642.3 | 85.3% | 82.2% | (many diffs) |
| 17 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539351.2 | 85.3% | 82.2% | (many diffs) |
| 18 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539353.2 | 85.3% | 82.2% | (many diffs) |
| 19 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539354.2 | 85.3% | 82.2% | (many diffs) |
| 20 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539355.2 | 85.3% | 82.2% | (many diffs) |
| 21 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015756.2 | 85.3% | 82.2% | (many diffs) |
| 22 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015757.2 | 85.3% | 82.2% | (many diffs) |
| 23 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447830.1 | 85.3% | 82.2% | (many diffs) |
| 24 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539357.2 | 81.8% | 81.6% | 0_1ins279;799G>A |
| 25 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539358.2 | 81.8% | 81.6% | 0_1ins279;799G>A |
| 26 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447831.1 | 81.8% | 81.6% | 0_1ins279;799G>A |
| 27 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_022802.3 | 47.4% | 44.3% | (many diffs) |
| 28 | human | 403340 | MGC70870 | C-terminal binding protein ... | NR_003682.1 | 39.8% | (many diffs) | |
| 29 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_009980.4 | 75.6% | 81.8% | (many diffs) |
| 30 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507308.3 | 75.6% | 81.8% | (many diffs) |
| 31 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507309.3 | 75.6% | 81.8% | (many diffs) |
| 32 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507310.3 | 75.6% | 81.8% | (many diffs) |
| 33 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507311.3 | 75.6% | 81.8% | (many diffs) |
| 34 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507312.3 | 75.6% | 81.8% | (many diffs) |
| 35 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507314.3 | 73.9% | 82.4% | (many diffs) |
| 36 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_001347623.1 | 72.9% | 81.2% | (many diffs) |
| 37 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507315.3 | 72.9% | 81.2% | (many diffs) |
| 38 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_001170744.1 | 42.7% | 43.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1605
- ORF length:
- 1539
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG ACCAGGACTT CCAGGCCCCA CAGGGTTGTG CGCTCAGACC TCAAGTAGGG 121 GCCAGAAGAG TGTACTGAAA CAGAAGGAAT CTTGTGGAAT TTGGCAGTTG TACCATTTTC 181 TTAGCAGAAA ACAGGAGCCC AGGTGGGAGC CATGTGTGTC GGGTTCCTCG TCAGGTGACG 241 GTGCTGTTGC GGATCTCGCG GATGAGCTGA GGGGGTATCC AGCTTTGTGC TGCACGCTTC 301 CTGTCCACTC ATACAGGTCG TGGGCTGGTA TCCGCCCCCA GATCATGAAC GGCCCCCTGC 361 ACCCCCGCCC CCTGGTGGCG CTGCTGGACG GCCGCGACTG CACTGTGGAG ATGCCCATCC 421 TGAAGGACCT GGCCACTGTG GCCTTCTGTG ACGCGCAGTC GACGCAGGAA ATCCACGAGA 481 AGGTTCTAAA CGAAGCCGTG GGCGCCATGA TGTACCACAC CATCACCCTC ACCAGGGAGG 541 ACCTGGAGAA GTTCAAGGCC CTGAGAGTGA TCGTGCGGAT AGGCAGTGGC TATGACAACG 601 TGGACATCAA GGCTGCCGGC GAGCTCGGAA TTGCCGTGTG CAACATCCCG TCTGCAGCCG 661 TGGAAGAGAC AGCGGACTCT ACCATCTGCC ACATCCTCAA CCTGTACCGG AGGAACACGT 721 GGCTGTACCA GGCACTGCGG GAAGGCACGC GGGTTCAGAG CGTGGAGCAG ATCCGCGAGG 781 TGGCCTCGGG AGCGGCCCGC ATCCGTGGGG AGACGCTGGG CCTCATTGGC TTTGGTCGCA 841 CGGGGCAGGC GGTTGCAGTT CGAGCCAAGG CCTTTGGATT CAGCGTCATA TTTTATGACC 901 CCTACTTGCA GGATGGGATC GAGCGGTCCC TGGGCGTGCA GAGGGTCTAC ACCCTGCAGG 961 ATTTGCTGTA TCAGAGCGAC TGCGTCTCCT TGCACTGCAA TCTCAACGAA CATAACCACC 1021 ACCTCATCAA TGACTTTACC ATAAAGCAGA TGAGGCAGGG AGCATTCCTT GTGAACGCAG 1081 CCCGTGGCGG CCTGGTGGAC GAGAAAGCCT TAGCACAAGC CCTCAAGGAG GGCAGGATAC 1141 GAAGGGCAGC CCTCGACGTG CATGAGTCAG AGCCCTTCAG CTTTGCTCAG GGTCCGTTGA 1201 AAGATGCCCC GAATCTCATC TGCACTCCTC ACACTGCCTG GTACAGTGAG CAGGCGTCAC 1261 TGGAGATGAG GGAGGCAGCT GCCACCGAGA TCCGCCGAGC CATCACAGGT CGCATCCCAG 1321 AAAGCTTAAG AAATTGTGTG AACAAGGAAT TCTTTGTCAC ATCAGCGCCT TGGTCAGTAA 1381 TAGACCAGCA AGCAATTCAT CCTGAGCTCA ATGGTGCCAC ATACAGATAT CCGCCAGGCA 1441 TCGTGGGTGT GGCTCCAGGA GGACTTCCTG CAGCCATGGA AGGGATCATC CCTGGAGGCA 1501 TCCCAGTGAC TCACAACCTC CCGACAGTGG CACATCCTTC CCAAGCGCCC TCTCCCAACC 1561 AGCCCACAAA ACACGGGGAC AATCGAGAGC ACCCCAACGA GCAATACCCA ACTTTCTTGT 1621 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c