Construct: ORF ccsbBroadEn_10771

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016726.1_s300c1, BRDN0000393195
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCTN1 (1639)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1639 DCTN1 dynactin subunit 1 NM_001135041.2 17.3% 17.2% 1_2824delinsA
2 human 1639 DCTN1 dynactin subunit 1 NM_023019.3 17.2% 17.2% 1_2839delinsA
3 human 1639 DCTN1 dynactin subunit 1 NM_001190836.1 15.9% 15.9% 1_3115delinsA
4 human 1639 DCTN1 dynactin subunit 1 NM_001135040.2 15.7% 15.7% 1_3166delinsA
5 human 1639 DCTN1 dynactin subunit 1 NM_001190837.1 15.5% 15.4% 1_3220delinsA
6 human 1639 DCTN1 dynactin subunit 1 NM_004082.4 15.4% 15.4% 1_3241delinsA
7 human 1639 DCTN1 dynactin subunit 1 NR_033935.1 13.2% 1_3510delinsA;4104_4469del
8 mouse 13191 Dctn1 dynactin 1 XM_006505495.4 15.5% 16.3% (many diffs)
9 mouse 13191 Dctn1 dynactin 1 NM_001347310.1 15.4% 16.3% (many diffs)
10 mouse 13191 Dctn1 dynactin 1 NM_001198867.1 14.2% 15% (many diffs)
11 mouse 13191 Dctn1 dynactin 1 XM_030255137.1 14.2% 15% (many diffs)
12 mouse 13191 Dctn1 dynactin 1 XM_006505493.2 14.2% 15% (many diffs)
13 mouse 13191 Dctn1 dynactin 1 XM_006505494.1 14.2% 15% (many diffs)
14 mouse 13191 Dctn1 dynactin 1 XM_030255136.1 14.2% 15% (many diffs)
15 mouse 13191 Dctn1 dynactin 1 XM_006505492.2 14.1% 14.9% (many diffs)
16 mouse 13191 Dctn1 dynactin 1 XM_006505491.4 14.1% 14.8% (many diffs)
17 mouse 13191 Dctn1 dynactin 1 XM_006505490.2 14% 14.8% (many diffs)
18 mouse 13191 Dctn1 dynactin 1 XM_006505489.3 14% 14.8% (many diffs)
19 mouse 13191 Dctn1 dynactin 1 XM_017321379.2 14% 14.8% (many diffs)
20 mouse 13191 Dctn1 dynactin 1 NM_001198866.1 14% 14.7% (many diffs)
21 mouse 13191 Dctn1 dynactin 1 XM_006505488.3 14% 14.7% (many diffs)
22 mouse 13191 Dctn1 dynactin 1 XM_030255135.1 14% 14.7% (many diffs)
23 mouse 13191 Dctn1 dynactin 1 XM_006505487.3 13.9% 14.7% (many diffs)
24 mouse 13191 Dctn1 dynactin 1 XM_006505486.4 13.8% 14.6% (many diffs)
25 mouse 13191 Dctn1 dynactin 1 XM_006505485.2 13.8% 14.6% (many diffs)
26 mouse 13191 Dctn1 dynactin 1 NM_007835.2 13.8% 14.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
660
ORF length:
594
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC AGGCCCAGGG CTGGTGAAGG ACTCACCACT GCTGCTTCAG CAGATCTCTG
121CCATGAGGCT GCACATCTCC CAGCTCCAGC ATGAGAACAG CATCCTCAAG GGAGCCCAGA
181TGAAGGCATC CTTGGCATCC CTGCCCCCTC TGCATGTTGC AAAGCTATCC CATGAGGGCC
241CTGGCAGTGA GTTACCAGCT GGAGCGCTGT ATCGTAAGAC CAGCCAGCTG CTGGAGACAT
301TGAATCAATT GAGCACACAC ACGCACGTAG TAGACATCAC TCGCACCAGC CCTGCTGCCA
361AGAGCCCGTC GGCCCAACTT ATGGAGCAAG TGGCTCAGCT TAAGTCCCTG AGTGACACCG
421TCGAGAAGCT CAAGGATGAG GTCCTCAAGG AGACAGTATC TCAGCGCCCT GGAGCCACAG
481TACCCACTGA CTTTGCCACC TTCCCTTCAT CAGCCTTCCT CAGGGCCAAG GAGGAGCAGC
541AGGATGACAC AGTCTACATG GGCAAAGTGA CCTTCTCATG TGCGGCTGGT TTTGGACAGC
601GACACCGGCT GGTGCTGACC CAGGAGCAGC TGCACCAGCT TCACAGTCGC CTCATCTCCT
661ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
721acgaac

Download FASTA (ORF) (Full)