Construct: ORF ccsbBroadEn_10805

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013906.1_s300c1, BRDN0000387795
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPHB6 (2051)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2051 EPHB6 EPH receptor B6 NM_001280794.2 99.8% 99.8% 94G>T;894A>G;1011A>G
2 human 2051 EPHB6 EPH receptor B6 NM_001280795.2 99.8% 99.8% 94G>T;894A>G;1011A>G
3 human 2051 EPHB6 EPH receptor B6 NM_004445.6 71.2% 71.2% (many diffs)
4 human 2051 EPHB6 EPH receptor B6 XM_011515879.1 71.2% 71.2% (many diffs)
5 human 2051 EPHB6 EPH receptor B6 XM_011515880.1 71.2% 71.2% (many diffs)
6 human 2051 EPHB6 EPH receptor B6 XM_024446674.1 71.2% 71.2% (many diffs)
7 human 2051 EPHB6 EPH receptor B6 XM_011515881.3 71.1% 71.1% (many diffs)
8 human 2051 EPHB6 EPH receptor B6 XM_011515882.2 68.1% 68.1% (many diffs)
9 human 2051 EPHB6 EPH receptor B6 XM_024446675.1 68.1% 68.1% (many diffs)
10 human 2051 EPHB6 EPH receptor B6 NR_104001.2 65.2% (many diffs)
11 mouse 13848 Ephb6 Eph receptor B6 NM_001146351.1 62.9% 66.6% (many diffs)
12 mouse 13848 Ephb6 Eph receptor B6 NM_007680.4 62.9% 66.6% (many diffs)
13 mouse 13848 Ephb6 Eph receptor B6 XR_377419.3 22.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2256
ORF length:
2187
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTAGCTGTC GGGGGCTGCC GCTGCCAGCC TGGATACCAA CCAGCACGAG
121GAGACAAGGC CTGCCAAGCC TGCCCACGGG GGCTCTATAA GTCTTCTGCT GGGAATGCTC
181CCTGCTCACC ATGCCCTGCC CGCAGTCACG CTCCCAACCC AGCAGCCCCC GTTTGCCCCT
241GCCTGGAGGG CTTCTACCGG GCCAGTTCCG ACCCACCAGA GGCCCCCTGC ACTGGTCCTC
301CATCGGCTCC CCAGGAGCTT TGGTTTGAGG TGCAAGGCTC AGCACTCATG CTACACTGGC
361GCCTGCCTCG GGAGCTGGGG GGTCGAGGGG ACCTGCTCTT CAATGTCGTG TGCAAGGAGT
421GTGAAGGCCG CCAGGAACCT GCCAGCGGTG GTGGGGGCAC TTGTCACCGC TGCAGGGATG
481AGGTCCACTT CGACCCTCGC CAGAGAGGCC TGACTGAGAG CCGAGTGTTA GTGGGGGGAC
541TCCGGGCACA CGTACCCTAC ATCTTAGAGG TGCAGGCTGT TAATGGGGTG TCTGAGCTCA
601GCCCTGACCC TCCTCAGGCT GCAGCCATCA ATGTCAGCAC CAGCCATGAA GTGCCCTCTG
661CTGTCCCTGT GGTGCACCAG GTGAGCCGGG CATCCAACAG CATCACGGTG TCCTGGCCGC
721AGCCCGACCA GACCAATGGG AACATCCTGG ACTATCAGCT CCGCTACTAT GACCAGGCAG
781AAGACGAATC CCACTCCTTC ACCCTGACCA GCGAGACCAA CACTGCCACC GTGACACAGC
841TGAGCCCTGG CCACATCTAT GGTTTCCAGG TGCGGGCCCG GACTGCTGCC GGCCACGGCC
901CCTACGGGGG CAAAGTCTAT TTCCAGACAC TTCCTCAAGG GGAGCTGTCT TCCCAGCTTC
961CGGAAAGACT CTCCTTGGTG ATCGGCTCCA TCCTGGGGGC TTTGGCCTTC CTCCTGCTGG
1021CAGCCATCAC CGTGCTGGCG GTCGTCTTCC AGCGGAAGCG GCGTGGGACT GGCTACACGG
1081AGCAGCTGCA GCAATACAGC AGCCCAGGAC TCGGGGTGAA GTATTACATC GACCCCTCCA
1141CCTACGAGGA CCCCTGTCAG GCCATCCGAG AACTTGCCCG GGAAGTCGAT CCTGCTTATA
1201TCAAGATTGA GGAGGTCATT GGGACAGGCT CTTTTGGAGA AGTGCGCCAG GGCCGCCTGC
1261AGCCACGGGG ACGGAGGGAG CAGACTGTGG CCATCCAGGC CCTGTGGGCC GGGGGCGCCG
1321AAAGCCTGCA GATGACCTTC CTGGGCCGGG CCGCAGTGCT GGGTCAGTTC CAGCACCCCA
1381ACATCCTGCG GCTGGAGGGC GTGGTCACCA AGAGCCGACC CCTCATGGTG CTGACGGAGT
1441TCATGGAGCT TGGCCCCCTG GACAGCTTCC TCAGGCAGCG GGAGGGCCAG TTCAGCAGCC
1501TGCAGCTGGT GGCCATGCAG CGGGGAGTGG CTGCTGCCAT GCAGTACCTG TCCAGCTTTG
1561CCTTCGTCCA TCGCTCGCTG TCTGCCCACA GCGTGCTGGT GAATAGCCAC TTGGTGTGCA
1621AGGTGGCCCG TCTTGGCCAC AGTCCTCAGG GCCCAAGTTG TTTGCTTCGC TGGGCAGCCC
1681CAGAGGTCAT TGCACATGGA AAGCATACAA CATCCAGTGA TGTCTGGAGC TTTGGGATAC
1741TCATGTGGGA AGTGATGAGT TATGGAGAAC GGCCTTACTG GGACATGAGT GAGCAGGAGG
1801TACTAAATGC AATAGAGCAG GAGTTCCGGC TGCCCCCGCC TCCAGGCTGT CCTCCTGGAT
1861TACATCTACT TATGTTGGAC ACTTGGCAGA AGGACCGTGC CCGGCGGCCT CATTTTGACC
1921AGCTGGTGGC TGCATTTGAC AAGATGATCC GCAAGCCAGA TACCCTGCAG GCTGGCGGGG
1981ACCCAGGGGA AAGGCCTTCC CAGGCCCTTC TGACCCCTGT GGCCCTGGAC TTTCCTTGTC
2041TGGACTCACC CCAGGCCTGG CTTTCAGCCA TTGGACTGGA GTGCTACCAG GACAACTTCT
2101CCAAGTTTGG CCTCTGTACC TTCAGTGATG TGGCTCAGCT CAGCCTAGAA GACCTGCCTG
2161CCCTGGGCAT CACCCTGGCT GGCCACCAGA AGAAGCTGCT GCACCACATC CAGCTCCTTC
2221AGCAACACCT GAGGCAGCAG GGCTCAGTGG AGGTCTTGCC AACTTTCTTG TACAAAGTtg
2281gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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