Construct: ORF ccsbBroadEn_10835

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014285.1_s300c1, BRDN0000391233
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GABRR2 (2570)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2570 GABRR2 gamma-aminobutyric acid typ... NM_002043.5 100% 100%
2 human 2570 GABRR2 gamma-aminobutyric acid typ... XM_011535713.2 87% 84.7% (many diffs)
3 human 2570 GABRR2 gamma-aminobutyric acid typ... XM_011535714.3 78.7% 78.7% 0_1ins297
4 human 2570 GABRR2 gamma-aminobutyric acid typ... XM_011535715.3 78.7% 78.7% 0_1ins297
5 human 2570 GABRR2 gamma-aminobutyric acid typ... XM_011535716.3 78.7% 78.7% 0_1ins297
6 human 2570 GABRR2 gamma-aminobutyric acid typ... XM_011535717.3 78.7% 78.7% 0_1ins297
7 mouse 14409 Gabrr2 gamma-aminobutyric acid (GA... NM_008076.3 83.6% 85.5% (many diffs)
8 mouse 14409 Gabrr2 gamma-aminobutyric acid (GA... XM_006537616.2 81% 84% (many diffs)
9 mouse 14409 Gabrr2 gamma-aminobutyric acid (GA... XM_006537617.3 53.8% 56.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1464
ORF length:
1395
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTTATTTT ACAAGACTCA TTTTGTTCTT GTTTTGCTTG ATGGTTCTCG
121TGGAGAGCAG AAAACCCAAG AGGAAGCGAT GGACAGGGCA GGTGGAAATG CCCAAGCCAA
181GTCACTTATA TAAGAAGAAC CTTGATGTGA CCAAGATCCG GAAGGGAAAG CCTCAGCAGC
241TTCTCAGAGT GGACGAGCAC GACTTCAGCA TGAGACCCGC CTTCGGAGGC CCTGCCATCC
301CGGTGGGCGT GGACGTACAG GTGGAGAGCC TGGACAGCAT CTCCGAGGTG GACATGGACT
361TCACTATGAC CCTGTACCTG CGGCATTACT GGAAGGATGA GAGGCTAGCT TTCTCCAGCG
421CCAGCAACAA GAGCATGACC TTCGATGGCC GGCTGGTGAA GAAGATCTGG GTCCCTGATG
481TCTTCTTTGT TCACTCCAAA AGATCGTTCA CTCATGACAC CACCACTGAC AACATCATGC
541TGAGGGTGTT CCCAGATGGA CACGTGCTGT ACAGCATGAG GATTACGGTC ACTGCCATGT
601GCAACATGGA CTTCAGCCAC TTTCCCCTGG ACTCCCAGAC CTGTTCTTTG GAGCTGGAGA
661GCTATGCCTA TACAGATGAA GATCTAATGC TGTACTGGAA GAATGGGGAT GAATCCCTAA
721AAACAGATGA GAAGATCTCC TTGTCTCAGT TTCTGATTCA GAAATTTCAC ACAACTTCCA
781GGCTGGCCTT CTACAGCAGC ACTGGCTGGT ACAACCGTCT GTACATTAAC TTCACGTTGC
841GTCGCCACAT CTTCTTCTTC TTGCTCCAAA CATATTTCCC TGCCACTCTG ATGGTCATGC
901TGTCCTGGGT GTCCTTCTGG ATCGACCGCA GAGCTGTGCC TGCCAGAGTT TCACTGGGTA
961TCACGACGGT GCTGACCATG ACCACCATCA TCACGGGCGT GAATGCCTCC ATGCCGCGCG
1021TCTCCTACGT CAAGGCCGTG GACATCTACC TCTGGGTCAG CTTTGTGTTC GTGTTCCTCT
1081CGGTGCTGGA GTATGCGGCT GTCAACTACC TGACCACCGT GCAGGAGCGC AAGGAACGGA
1141AGCTGCGGGA GAAGTTCCCG TGCATGTGTG GAATGCTTCA TTCAAAAACC ATGATGCTGG
1201ATGGAAGCTA CAGTGAGTCT GAGGCCAACA GCCTGGCTGG GTACCCCAGA AGCCATATCC
1261TGACAGAAGA AGAAAGGCAA GACAAAATAG TGGTCCACCT GGGCCTGAGT GGTGAAGCCA
1321ACGCTGCCAG AAAGAAGGGG CTTCTGAAGG GCCAGACGGG TTTTCGTATC TTCCAGAATA
1381CCCATGCCAT TGACAAATAC TCTAGGTTGA TATTCCCTGC CTCCTACATA TTTTTCAACT
1441TAATTTATTG GTCAGTGTTT TCCTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1501agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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