Transcript: Human XR_001738907.2

PREDICTED: Homo sapiens ITPR interacting domain containing 2 (ITPRID2), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITPRID2 (6744)
Length:
5630
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738907.2
NBCI Gene record:
ITPRID2 (6744)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738907.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140203 GCATTCCGATAGCAGTGGTTT pLKO.1 1831 3UTR 100% 4.950 6.930 N ITPRID2 n/a
2 TRCN0000140159 GCTAGGTCTTACGAAGTCGAA pLKO.1 1780 3UTR 100% 2.640 3.696 N ITPRID2 n/a
3 TRCN0000144703 GCTTTACCCAAGACAAATGTA pLKO.1 5041 3UTR 100% 5.625 4.500 N ITPRID2 n/a
4 TRCN0000140225 GCACTGGTGGAGGTGTTATTT pLKO.1 4502 3UTR 100% 15.000 10.500 N ITPRID2 n/a
5 TRCN0000121878 GCTGTGTAATACTGGAATTAT pLKO.1 4472 3UTR 100% 15.000 10.500 N ITPRID2 n/a
6 TRCN0000145533 CCATCATCTGTGAAGAAAGAA pLKO.1 2729 3UTR 100% 5.625 3.938 N ITPRID2 n/a
7 TRCN0000121696 CTGTGCAATAACTGATTCATT pLKO.1 4826 3UTR 100% 5.625 3.938 N ITPRID2 n/a
8 TRCN0000144343 CTTCCAGACTTATCCAACTTA pLKO.1 4747 3UTR 100% 5.625 3.938 N ITPRID2 n/a
9 TRCN0000122570 CCACTGACAATACCATCCATA pLKO.1 1667 3UTR 100% 4.950 3.465 N ITPRID2 n/a
10 TRCN0000121851 GAAATGAATAAGCTGGTGTTT pLKO.1 5239 3UTR 100% 4.950 3.465 N ITPRID2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738907.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11159 pDONR223 100% 12.9% None 1_3701del;3869_3870ins66;4437_5630del n/a
2 ccsbBroad304_11159 pLX_304 0% 12.9% V5 1_3701del;3869_3870ins66;4437_5630del n/a
3 TRCN0000480459 TGTAATCTGCACTGTAAGTGAATG pLX_317 48.8% 12.9% V5 1_3701del;3869_3870ins66;4437_5630del n/a
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