Construct: ORF ccsbBroadEn_11192
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015316.1_s300c1, BRDN0000456751
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TLE4 (7091)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001282753.1 | 100% | 100% | |
| 2 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015083.1 | 97.4% | 97.5% | 45A>G;730_783del |
| 3 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351564.1 | 96.4% | 96.4% | 314_315ins75 |
| 4 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015081.1 | 94% | 94.1% | (many diffs) |
| 5 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351562.1 | 94% | 94% | 314_315ins75;655_708del |
| 6 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351563.2 | 92.7% | 92.1% | (many diffs) |
| 7 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015074.1 | 92.1% | 92.1% | 45A>G;390_515del;856_909del |
| 8 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518969.1 | 91.2% | 91.3% | 45A>G;390_515del;1260_1334del |
| 9 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_007005.4 | 91% | 91% | 729_935del |
| 10 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351542.1 | 90.9% | 90.9% | 390_392delGCA;732_938del |
| 11 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351546.2 | 89.8% | 89.2% | (many diffs) |
| 12 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351543.2 | 89.7% | 89.1% | (many diffs) |
| 13 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351541.1 | 89.5% | 89.5% | 390_428del;768_974del |
| 14 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518967.1 | 89.1% | 89.2% | (many diffs) |
| 15 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015075.1 | 89% | 89.1% | 45A>G;206_207ins45;684_890del |
| 16 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351552.1 | 88.3% | 88.3% | 250_251ins63;666_872del |
| 17 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351550.1 | 88.2% | 88.2% | 250_251ins63;327_329delGCA;669_875del |
| 18 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518966.1 | 88.1% | 88.2% | 45A>G;729_935del;1341_1415del |
| 19 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518965.1 | 88% | 88.1% | (many diffs) |
| 20 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351558.1 | 87.9% | 87.8% | 317_318ins72;657_863del |
| 21 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351547.2 | 87.9% | 87.3% | (many diffs) |
| 22 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001282749.1 | 87.8% | 87.8% | 314_315ins75;654_860del |
| 23 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001282748.1 | 87.4% | 87.4% | 730_1032del |
| 24 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351556.2 | 87.1% | 86.5% | (many diffs) |
| 25 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001351560.2 | 86.7% | 86% | (many diffs) |
| 26 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_006717268.1 | 86.3% | 86.3% | 45A>G;390_515del;855_1061del |
| 27 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518960.1 | 84.7% | 84.8% | 45A>G;730_1032del;1437_1511del |
| 28 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518959.1 | 84.6% | 84.7% | (many diffs) |
| 29 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518958.1 | 83.7% | 83.8% | (many diffs) |
| 30 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015067.1 | 83.5% | 83% | (many diffs) |
| 31 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518957.1 | 83.4% | 83.5% | (many diffs) |
| 32 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518956.1 | 83.3% | 83.4% | (many diffs) |
| 33 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_006717264.1 | 83% | 83.1% | 45A>G;390_515del;856_1158del |
| 34 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015068.1 | 82.8% | 82.9% | (many diffs) |
| 35 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518962.1 | 82.2% | 82.2% | (many diffs) |
| 36 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518961.1 | 82.1% | 82.1% | (many diffs) |
| 37 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518963.1 | 81.8% | 81.8% | (many diffs) |
| 38 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518964.1 | 81.7% | 81.8% | (many diffs) |
| 39 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015069.2 | 80.8% | 80.1% | (many diffs) |
| 40 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518952.1 | 80.6% | 80.7% | (many diffs) |
| 41 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_017015070.1 | 80.6% | 80.1% | (many diffs) |
| 42 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518953.2 | 79.6% | 79.1% | (many diffs) |
| 43 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518968.1 | 79.3% | 79.2% | (many diffs) |
| 44 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518954.1 | 78.9% | 79% | (many diffs) |
| 45 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518955.1 | 78.2% | 78.3% | (many diffs) |
| 46 | human | 7091 | TLE4 | TLE family member 4, transc... | NM_001282760.1 | 75.4% | 75.4% | 0_1ins363;366_572del |
| 47 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_006717263.1 | 73.1% | 78.6% | (many diffs) |
| 48 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_006717262.1 | 73.1% | 78.5% | (many diffs) |
| 49 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_011518951.2 | 73% | 78.5% | (many diffs) |
| 50 | human | 7088 | TLE1 | TLE family member 1, transc... | NM_005077.5 | 73% | 78.4% | (many diffs) |
| 51 | human | 7088 | TLE1 | TLE family member 1, transc... | NM_001303104.1 | 73% | 77.9% | (many diffs) |
| 52 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_017015065.1 | 72.2% | 77.6% | (many diffs) |
| 53 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_005252156.3 | 72.1% | 77.5% | (many diffs) |
| 54 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_017015064.1 | 72.1% | 77.5% | (many diffs) |
| 55 | human | 7088 | TLE1 | TLE family member 1, transc... | NM_001303103.1 | 72% | 77.4% | (many diffs) |
| 56 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_005252154.1 | 70.4% | 75.2% | (many diffs) |
| 57 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_005252153.1 | 70.3% | 75.1% | (many diffs) |
| 58 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_006717258.1 | 69.5% | 74.3% | (many diffs) |
| 59 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_005252152.1 | 69.5% | 74.2% | (many diffs) |
| 60 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_005252151.1 | 69.4% | 74.2% | (many diffs) |
| 61 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_017015066.1 | 68.6% | 73.1% | (many diffs) |
| 62 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_024447659.1 | 66.6% | 65.1% | (many diffs) |
| 63 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_006717259.4 | 66.1% | 70% | (many diffs) |
| 64 | human | 7091 | TLE4 | TLE family member 4, transc... | XM_011518972.3 | 64.4% | 62.9% | (many diffs) |
| 65 | human | 7088 | TLE1 | TLE family member 1, transc... | XM_006717261.2 | 58.7% | 61.6% | (many diffs) |
| 66 | human | 7091 | TLE4 | TLE family member 4, transc... | NR_104239.1 | 40.5% | (many diffs) | |
| 67 | mouse | 21888 | Tle4 | transducin-like enhancer of... | NM_011600.3 | 84.2% | 90.8% | (many diffs) |
| 68 | mouse | 21888 | Tle4 | transducin-like enhancer of... | NM_001302947.1 | 84.1% | 90.6% | (many diffs) |
| 69 | mouse | 21888 | Tle4 | transducin-like enhancer of... | NM_001302951.1 | 83.1% | 88.8% | (many diffs) |
| 70 | mouse | 21888 | Tle4 | transducin-like enhancer of... | NM_001302950.1 | 81.1% | 87.5% | (many diffs) |
| 71 | mouse | 21888 | Tle4 | transducin-like enhancer of... | XM_006526913.2 | 81% | 87.5% | (many diffs) |
| 72 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249986.2 | 72.3% | 78.9% | (many diffs) |
| 73 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_006537761.2 | 72.3% | 78.8% | (many diffs) |
| 74 | mouse | 21885 | Tle1 | transducin-like enhancer of... | NM_001285529.1 | 72.2% | 78.8% | (many diffs) |
| 75 | mouse | 21885 | Tle1 | transducin-like enhancer of... | NM_011599.5 | 72.2% | 78.7% | (many diffs) |
| 76 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_006537760.2 | 71.6% | 78% | (many diffs) |
| 77 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249981.2 | 71.5% | 77.9% | (many diffs) |
| 78 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_006537759.2 | 71.3% | 77.8% | (many diffs) |
| 79 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_006537758.2 | 71.2% | 77.7% | (many diffs) |
| 80 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249980.2 | 70.7% | 77% | (many diffs) |
| 81 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249978.2 | 70.6% | 76.9% | (many diffs) |
| 82 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320108.1 | 70% | 75.5% | (many diffs) |
| 83 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320107.1 | 69.9% | 75.4% | (many diffs) |
| 84 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249982.2 | 69.3% | 74.8% | (many diffs) |
| 85 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320106.1 | 69.3% | 74.7% | (many diffs) |
| 86 | mouse | 21888 | Tle4 | transducin-like enhancer of... | XM_006526914.3 | 69.1% | 75% | (many diffs) |
| 87 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320105.1 | 69.1% | 74.5% | (many diffs) |
| 88 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_011249979.2 | 68.5% | 73.9% | (many diffs) |
| 89 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320104.1 | 68.4% | 73.8% | (many diffs) |
| 90 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320109.1 | 65.2% | 69.6% | (many diffs) |
| 91 | mouse | 21885 | Tle1 | transducin-like enhancer of... | XM_017320110.1 | 64.1% | 68.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2181
- ORF length:
- 2112
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATTCGCGAC CTGAGCAAGA TGTACCCGCA GACCAGACAC CCGGCACCGC 121 ATCAGCCTGC TCAACCCTTT AAATTTACAA TTTCCGAATC CTGTGATCGG ATTAAGGAAG 181 AGTTTCAGTT TTTACAGGCT CAATACCACA GTCTGAAGCT GGAATGTGAG AAACTCGCCA 241 GTGAGAAGAC AGAGATGCAG CGGCATTATG TCATGTATTA TGAAATGTCC TATGGGTTGA 301 ATATAGAAAT GCACAAGCAG GCAGAGATTG TCAAGAGGCT GAATGCTATC TGTGCACAAG 361 TCATTCCTTT CCTGTCCCAA GAGCACCAGC AACAAGTGGT GCAGGCTGTG GAACGGGCCA 421 AGCAGGTGAC CATGGCAGAA CTGAACGCCA TCATTGGGCA ACAACTCCAG GCCCAGCATT 481 TATCACATGG ACATGGTCTC CCCGTACCTC TGACTCCACA CCCTTCAGGG CTCCAGCCCC 541 CTGCCATTCC ACCCATCGGT AGCAGTGCCG GGCTTCTGGC CCTCTCCAGT GCTCTAGGAG 601 GTCAGTCCCA TCTTCCAATT AAAGATGAGA AGAAGCACCA TGACAATGAT CACCAAAGAG 661 ACAGAGACTC CATCAAGAGC TCTTCAGTAT CCCCATCAGC CAGTTTCCGA GGTGCTGAGA 721 AGCACAGAAA CTCCGCAGAC TACTCCTCAG AGAGCAAAAA GCAGAAAACT GAAGAAAAGG 781 AAATTGCAGC TCGTTATAAT GAAAAATCTA CTACTCCCGT CTCAAAGTCC AATACCCCTA 841 CTCCACGAAC TGATGCGCCC ACCCCAGGCA GTAACTCTAC TCCCGGATTG AGGCCTGTAC 901 CTGGAAAACC ACCAGGAGTT GACCCTTTGG CCTCAAGCCT AAGGACCCCA ATGGCAGTAC 961 CTTGTCCATA TCCAACTCCA TTTGGGATTG TGCCCCATGC TGGAATGAAC GGAGAGCTGA 1021 CCAGCCCCGG AGCGGCCTAC GCTGGGCTCC ACAACATCTC CCCTCAGATG AGCGCAGCTG 1081 CTGCCGCCGC CGCTGCTGCT GCTGCCTATG GGAGATCACC AGTGGTGGGA TTTGATCCAC 1141 ACCATCACAT GCGTGTGCCA GCAATACCTC CAAACCTGAC AGGCATTCCA GGAGGAAAAC 1201 CAGCATACTC CTTCCATGTT AGCGCAGATG GTCAGATGCA GCCTGTCCCT TTTCCACCCG 1261 ACGCCCTCAT CGGACCTGGA ATCCCCCGGC ATGCTCGCCA GATCAACACC CTCAACCACG 1321 GGGAGGTGGT GTGCGCGGTG ACCATCAGCA ACCCCACGAG ACACGTGTAC ACGGGTGGGA 1381 AGGGCTGCGT CAAGGTCTGG GACATCAGCC ACCCAGGCAA TAAGAGTCCT GTCTCCCAGC 1441 TCGACTGTCT GAACAGGGAT AACTACATCC GTTCCTGCAG ATTGCTCCCT GATGGTCGCA 1501 CCCTAATTGT TGGAGGGGAA GCCAGTACTT TGTCCATTTG GGACCTGGCG GCTCCAACCC 1561 CACGCATCAA GGCAGAGCTG ACATCCTCGG CCCCCGCCTG CTATGCCCTG GCCATCAGCC 1621 CCGATTCCAA GGTCTGCTTC TCATGCTGCA GCGACGGCAA CATCGCTGTG TGGGATCTGC 1681 ACAACCAGAC CTTGGTGAGG CAATTCCAGG GCCACACAGA TGGAGCCAGC TGTATTGACA 1741 TTTCTAATGA TGGCACCAAG CTCTGGACAG GTGGTTTGGA CAACACGGTC AGGTCCTGGG 1801 ACCTGCGCGA GGGGCGGCAG CTGCAGCAGC ACGACTTCAC CTCCCAGATC TTTTCTCTGG 1861 GCTACTGCCC AACTGGAGAG TGGCTTGCAG TGGGGATGGA GAACAGCAAT GTGGAAGTTT 1921 TGCATGTCAC CAAGCCAGAC AAATACCAAC TACATCTTCA TGAGAGCTGT GTGCTGTCGC 1981 TCAAGTTTGC CCATTGTGGC AAATGGTTTG TAAGCACTGG AAAGGACAAC CTTCTGAATG 2041 CCTGGAGAAC ACCTTATGGG GCCAGTATAT TCCAGTCCAA AGAATCCTCA TCGGTGCTTA 2101 GCTGTGACAT CTCCGTGGAC GACAAATACA TTGTCACTGG CTCTGGGGAT AAGAAGGCCA 2161 CAGTTTATGA AGTTATTTAT TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 2221 attgcttatc aatttgttgc aacgaac