Construct: ORF ccsbBroadEn_11343

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013940.1_s300c1, BRDN0000392179
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CBFA2T2 (9139)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028123.1 49.9% 43.4% (many diffs)
2 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529102.2 40.4% 35.5% (many diffs)
3 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_001039709.1 40.3% 35.4% (many diffs)
4 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529103.2 40.3% 35.4% (many diffs)
5 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028121.1 40.3% 35.4% (many diffs)
6 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028122.2 39.1% 34.3% (many diffs)
7 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_001032999.3 39% 34.3% (many diffs)
8 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_005093.3 38.5% 33.8% (many diffs)
9 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529101.2 37.8% 33.3% (many diffs)
10 mouse 12396 Cbfa2t2 core-binding factor, runt d... XM_006498640.2 37% 37.8% (many diffs)
11 mouse 12396 Cbfa2t2 core-binding factor, runt d... NM_009823.1 35.8% 36.6% (many diffs)
12 mouse 12396 Cbfa2t2 core-binding factor, runt d... NM_172860.2 35.7% 36.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
855
ORF length:
789
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA TGGATCGCCT GTGGAAGTGA AGATACAGTC CAGATCCTCA CCTCCCACCA
121TGCCACCCCT CCCACCAATA AATCCTGGAG GACCGAGGCC AGTGTCCTTC ACTCCTACTG
181CATTAAGCAA TGGCATCAAC CATTCTCCTC CTACCCTGAA TGGTGCCCCA TCACCGCCAC
241AGAGATTCAG CAATGGTCCT GCCTCCTCCA CATCATCTGC ACTCACAAAT CAGCAATTGC
301CAGCCACTTG TGGTGCTCGA CAACTCAGCA AGTTGAAACG CTTTCTTACC ACTCTGCAAC
361AGTTTGGCAA TGACATCTCC CCTGAGATTG GGGAGAAGGT GCGGACTCTT GTTCTTGCAC
421TGGTGAACTC AACAGTGACA ATTGAGGAAT TCCACTGTAA GCTCCAAGAA GCCACAAACT
481TTCCCCTTCG TCCTTTTGTG ATTCCATTTC TCAAGGCCAA CCTGCCCCTG CTGCAGCGGG
541AACTGCTGCA CTGCGCTCGG GCGGCCAAGC AGACCCCATC CCAGTACCTG GCTCAGCACG
601AACACCTTCT GCTCAACACA AGCATTGCAT CGCCTGCTGA CTCGTCAGAG TTGCTCATGG
661AGGTGCACGG AAATGGGAAG AGGCCCAGTC CAGAGAGCTG CATAATACAT CTAAAATCTA
721TGGGAGTAGC TTCCAGACAT GAGTATTTTT CGGGAACTCT TCAGATGCCT GCACACCCGG
781TAAGAAACTC TACTCTAGAG AATTTATGGG TCGACTGTTC CAGAAGCCTC AGGAGTACAG
841TTCTGCCTTT TCCTTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
901tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)