Construct: ORF ccsbBroadEn_11376

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017490.1_s300c1, BRDN0000396082
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC4A8 (9498)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9498 SLC4A8 solute carrier family 4 mem... NM_001258402.2 100% 100%
2 human 9498 SLC4A8 solute carrier family 4 mem... NM_001267615.1 92.3% 92.3% 0_1ins159
3 human 9498 SLC4A8 solute carrier family 4 mem... XM_006719700.1 85.2% 83.3% (many diffs)
4 human 9498 SLC4A8 solute carrier family 4 mem... NM_001258403.1 78.6% 76.7% (many diffs)
5 human 9498 SLC4A8 solute carrier family 4 mem... XM_017020241.2 63% 61.1% (many diffs)
6 human 9498 SLC4A8 solute carrier family 4 mem... NM_001039960.3 62.4% 61.1% (many diffs)
7 human 9498 SLC4A8 solute carrier family 4 mem... XM_011539010.1 61.4% 60.1% (many diffs)
8 human 9498 SLC4A8 solute carrier family 4 mem... XM_017020240.1 59.4% 55.1% (many diffs)
9 human 9498 SLC4A8 solute carrier family 4 mem... NM_001258401.2 57.5% 56.3% (many diffs)
10 human 9498 SLC4A8 solute carrier family 4 mem... XM_011539011.1 56.6% 55.4% (many diffs)
11 human 9498 SLC4A8 solute carrier family 4 mem... XM_017020242.1 56.6% 55.4% (many diffs)
12 human 9498 SLC4A8 solute carrier family 4 mem... XM_024449282.1 56.6% 55.4% (many diffs)
13 human 9498 SLC4A8 solute carrier family 4 mem... XM_011539014.3 17.5% 16.3% (many diffs)
14 mouse 59033 Slc4a8 solute carrier family 4 (an... NM_021530.2 55% 58.8% (many diffs)
15 mouse 59033 Slc4a8 solute carrier family 4 (an... NM_001347102.1 50.5% 54% (many diffs)
16 mouse 59033 Slc4a8 solute carrier family 4 (an... XM_017316718.1 50.5% 54% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2139
ORF length:
2073
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GGCCGCCGGG AGTAACGAGC CGGACGGCGT CCTCAGCTAT CAGAGACCAG
121ATGAAGAAGC TGTGGTGGAT CAGGGTGGGA CCAGTACAAT TCTCAACATT CACTATGAAA
181AAGAAGAGCT GGAAGGTCAC AGAACTCTGT ATGTGGGAGT TCGGATGCCG CTTGGCCGGC
241AGAGCCATCG GCATCACCGC ACTCATGGCC AGAAGCACCG GAGACGAGGG CGGGGCAAAG
301GAGCCAGCCA GGGGGAGGAA GGCCTGGAAG CCCTGGCCCA CGACACACCA TCTCAGCGTG
361TTCAGTTCAT TCTTGGCACC GAGGAAGATG AAGAGCATGT GCCTCATGAG CTGTTTACAG
421AGCTGGATGA GATCTGTATG AAAGAGGGAG AAGATGCTGA GTGGAAGGAA ACAGCCAGGT
481GGCTGAAGTT TGAAGAAGAT GTTGAAGATG GGGGAGAACG CTGGAGCAAG CCTTATGTGG
541CAACCCTTTC ATTGCACAGC CTGTTTGAGC TAAGGAGCTG CCTTATTAAT GGAACAGTCC
601TCCTGGATAT GCATGCAAAT AGCATAGAAG AAATTTCAGA CCTGATCCTG GATCAGCAAG
661AACTGTCCAG TGACCTGAAT GACAGCATGA GGGTTAAAGT GCGGGAAGCC CTTCTCAAAA
721AGCATCATCA TCAGAATGAA AAGAAGAGAA ACAACCTCAT TCCCATTGTT CGCTCCTTTG
781CTGAGGTTGG CAAGAAGCAG TCTGATCCTC ATTTGATGGA TAAACATGGT CAAACCGTGT
841CTCCTCAGTC TGTTCCAACT ACAAATCTTG AAGTAAAAAA TGGAGTGAAT TGTGAACATA
901GTCCTGTGGA TTTAAGCAAG GTAGACCTTC ATTTCATGAA AAAAATTCCT ACTGGGGCCG
961AGGCCTCCAA TGTCCTGGTT GGAGAGGTGG ATATTTTGGA CCGTCCCATT GTTGCCTTTG
1021TGAGGCTGTC TCCAGCTGTT CTTCTCTCAG GCCTAACAGA AGTGCCAATC CCAACAAGAT
1081TTTTGTTTAT CTTATTGGGT CCAGTAGGGA AAGGTCAGCA GTACCATGAG ATTGGCAGAT
1141CCATGGCCAC CATCATGACA GATGAGATTT TTCATGACGT AGCATATAAG GCAAAAGAGC
1201GAGATGATCT CCTGGCGGGG ATTGATGAGT TCCTAGACCA GGTGACGGTG CTCCCTCCAG
1261GAGAGTGGGA TCCCTCCATT AGAATTGAGC CACCCAAAAA TGTCCCTTCC CAGGAGAAAA
1321GGAAAATGCC TGGAGTTCCA AATGGAAATG TTTGCCACAT AGAACAGGAA CCACATGGGG
1381GTCACAGTGG GCCAGAACTT CAGCGCACTG GGCGGCTATT TGGGGGCTTG GTGCTGGACA
1441TCAAGCGGAA GGCCCCCTGG TACTGGAGCG ACTACCGAGA TGCACTCAGC TTACAGTGTT
1501TGGCTTCCTT TCTGTTCCTG TACTGTGCCT GCATGTCACC TGTCATCACC TTTGGGGGAC
1561TGCTTGGAGA AGCCACTGAG GGACGCATAA GTGCAATTGA ATCCTTGTTT GGAGCTTCCA
1621TGACTGGGAT TGCTTATTCC TTGTTTGCGG GACAGGCTCT CACCATCCTG GGAAGTACTG
1681GACCAGTGCT TGTGTTTGAA AAGATTTTGT TCAAATTCTG CAAAGACTAT GCTCTTTCAT
1741ACCTCTCCCT GCGAGCTTGT ATTGGACTGT GGACCGCTTT CCTGTGTATT GTCCTTGTGG
1801CAACTGATGC CAGTTCCCTT GTCTGCTACA TTACCCGTTT CACTGAAGAA GCATTTGCCT
1861CCCTAATTTG CATTATTTTC ATCTATGAAG CAATAGAAAA ACTGATTCAC CTGGCAGAGA
1921CCTACCCCAT CCACATGCAC AGCCAGCTGG ACCACCTTAG CCTCTATTAC TGCAGGTGTA
1981CTCTGCCAGA GAATCCAAAC AATCACACCC TCCAGTACTG GAAGGACCAC AACATCGTGA
2041CAGCAGAAGT CCACTGGGCT AACCTGACTG TCAGTGTAAG TCTGGGAGCT GCCAGATGTC
2101CTAGCATTGT GACCACAGGT TTAGGAGGGA CTTCTAAGTG CCCAACTTTC TTGTACAAAG
2161Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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