Construct: ORF ccsbBroadEn_11432

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018398.1_s300c1, BRDN0000396859
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARNT2 (9915)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9915 ARNT2 aryl hydrocarbon receptor n... NM_014862.4 96.7% 95.7% (many diffs)
2 mouse 11864 Arnt2 aryl hydrocarbon receptor n... NM_007488.3 86% 92.8% (many diffs)
3 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507244.3 85.6% 93% (many diffs)
4 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507239.3 85.5% 92.3% (many diffs)
5 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507238.3 84.7% 91.7% (many diffs)
6 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507240.2 84.6% 91.3% (many diffs)
7 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507242.2 84.6% 91.3% (many diffs)
8 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_011241655.2 84.6% 91.3% (many diffs)
9 mouse 11864 Arnt2 aryl hydrocarbon receptor n... XM_006507243.1 84.1% 90.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2214
ORF length:
2148
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAGAAG
61TTGGCATGGC AACCCCGGCG GCGGTCAACC CTCCGGAAAT GGCTTCAGAC ATACCTGGAT
121CTGTGACGTT GCCCGTTGCC CCCATGGCGG CCACCGGACA GGTGAGGATG GCGGGGGCCA
181TGCCTGCCCG TGGAGGAAAG CGGCGTTCCG GAATGGACTT CGATGATGAA GATGGTGAAG
241GCCCCAGTAA ATTTTCAAGA GAGAATCATA GTGAAATCGA AAGGCGCAGA CGGAACAAGA
301TGACTCAGTA CATCACGGAG CTCTCCGACA TGGTCCCCAC ATGCAGCGCA CTGGCTCGGA
361AGCCAGACAA GCTCACCATC CTCCGCATGG CCGTCTCGCA CATGAAGTCC ATGAGGGGTA
421CAGGGAACAA GTCCACCGAT GGCGCGTACA AGCCTTCCTT CCTCACAGAG CAGGAACTGA
481AGCATCTCAT CCTTGAAGCA GCTGATGGAT TTCTGTTTGT GGTGGCTGCT GAGACAGGGC
541GAGTGATTTA TGTGTCTGAC TCCGTCACCC CTGTTCTGAA CCAGCCCCAG TCAGAGTGGT
601TTGGGAGCAC ACTGTATGAA CAGGTGCATC CTGATGACGT GGAGAAGCTG AGAGAGCAAC
661TGTGCACCTC AGAAAACTCA ATGACAGGCC GGATCTTGGA CCTGAAGACT GGGACGGTCA
721AGAAAGAAGG GCAGCAGTCA TCCATGAGGA TGTGCATGGG CTCGCGGCGG TCTTTCATCT
781GCAGGATGAG GTGTGGAAAT GCTCCTTTGG ACCACCTTCC TCTAAACAGA ATAACCACCA
841TGAGGAAAAG GTTCAGGAAT GGCCTTGGCC CTGTGAAAGA AGGAGAAGCC CAATATGCTG
901TGGTCCACTG TACAGGATAC ATCAAGGCCT GGCCACCAGC AGGAATGACC ATACCTGAAG
961AAGACGCTGA TGTGGGACAA GGCAGTAAAT ATTGCCTCGT GGCAATTGGG AGACTCCAGG
1021TGACCAGCTC TCCTGTATGC ATGGACATGA ATGGGATGTC GGTGCCCACA GAGTTCTTAT
1081CCCGGCATAA CTCCGATGGA ATCATCACAT TTGTGGATCC AAGATGTATC AGTGTGATTG
1141GCTACCAACC GCAGGATCTT CTGGGAAAGG ACATTTTGGA ATTCTGCCAC CCTGAGGATC
1201AAAGCCATCT GCGTGAGAGC TTCCAGCAGG TGGTTAAGCT GAAAGGCCAA GTCCTGTCGG
1261TCATGTATCG ATTTCGCACC AAGAACCGGG AGTGGATGTT GATCCGCACC AGCAGCTTCA
1321CATTCCAGAA TCCCTATTCT GATGAGATTG AGTACATCAT CTGCACCAAC ACCAACGTCA
1381AGCAACTTCA GCAACAGCAG GCAGAATTGG AAGTGCACCA GAGAGATGGA TTGTCATCGT
1441ATGACTTATC CCAGGTCCCC GTCCCCAACC TACCAGCCGG TGTTCATGAG GCCGGGAAGT
1501CCGTGGAAAA GGCGGATGCA ATCTTCTCCC AGGAAAGAGA TCCTCGGTTT GCTGAAATGT
1561TTGCAGGAAT TAGTGCATCG GAGAAGAAGA TGATGAGCTC AGCCTCTGCA GCAGGAACCC
1621AGCAGATCTA CTCCCAAGGA AGCCCATTTC CCTCTGGACA CTCCGGGAAG GCCTTCAGCT
1681CTTCAGTGGT TCATGTGCCT GGAGTGAATG ATATTCAGTC CTCTTCTTCC ACGGGCCAGA
1741ACATGTCCCA AATCTCCCGG CAGCTAAACC AGAGTCAGGT GGCATGGACA GGGAGTCGTC
1801CGCCCTTTCC GGGACAGCAA ATCCCATCTC AGTCCAGCAA GACTCAGTCA TCTCCCTTTG
1861GGATTGGAAC GAGCCACACC TACCCGGCAG ACCCCTCTTC CTACAGCCCC CTCTCCAGCC
1921CAGCTACCTC CTCGCCAAGT GGGAATGCCT ACTCCAGTCT TGCCAACAGG ACTCCAGGGT
1981TCGCTGAAAG TGGACAAAGT AGCGGGCAGT TCCAAGGGCG GCCCTCGGAA GTCTGGTCGC
2041AGTGGCAAAG CCAGCACCAT GGCCAGCAGA GCGGTGAGCA GCACTCCCAC CAGCAGCCCG
2101GTCAGACTGA AGTGTTCCAG GACATGCTGC CCATGCCAGG AGATCCAGGG AATGAATGGT
2161GGTCTCCCCA CTCCCGGCAG CACTTTAGGC AGCCCATAAG CTATGCGAGA ATGTGCCCAA
2221CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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