Construct: ORF ccsbBroadEn_11900
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007128.1_s300c1, BRDN0000456593
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNA3 (29119)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29119 | CTNNA3 | catenin alpha 3 | NM_001291133.2 | 68.5% | 66.4% | (many diffs) |
| 2 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016158.2 | 68.5% | 66.4% | (many diffs) |
| 3 | human | 29119 | CTNNA3 | catenin alpha 3 | NM_001127384.2 | 57.4% | 56.9% | (many diffs) |
| 4 | human | 29119 | CTNNA3 | catenin alpha 3 | NM_013266.4 | 57.4% | 56.9% | (many diffs) |
| 5 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016153.1 | 56.7% | 56.2% | (many diffs) |
| 6 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016151.1 | 56% | 55.5% | (many diffs) |
| 7 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016152.1 | 53% | 52.5% | (many diffs) |
| 8 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016154.1 | 28.3% | 27.8% | (many diffs) |
| 9 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016155.2 | 28.3% | 27.8% | (many diffs) |
| 10 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016156.1 | 28.3% | 27.8% | (many diffs) |
| 11 | human | 29119 | CTNNA3 | catenin alpha 3 | XM_017016157.2 | 16.6% | 16.2% | (many diffs) |
| 12 | mouse | 216033 | Ctnna3 | catenin (cadherin associate... | NM_001164376.1 | 49.4% | 52% | (many diffs) |
| 13 | mouse | 216033 | Ctnna3 | catenin (cadherin associate... | NM_177612.3 | 49.4% | 52% | (many diffs) |
| 14 | mouse | 216033 | Ctnna3 | catenin (cadherin associate... | XM_006513475.2 | 49.4% | 52% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1617
- ORF length:
- 1548
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAGCTGAA ACACCAATCA CATTGAATAT CGATCCTCAG GATCTGCAGG 121 TCCAAACATT CACCGTGGAG AAGCTACTGG AGCCTCTCAT AATCCAGGTT ACCACACTTG 181 TAAACTGTCC CCAGAACCCT TCCAGCAGGA AAAAAGGACG TTCGAAAAGA GCCAGTGTCC 241 TTCTAGCTTC TGTGGAGGAA GCAACTTGGA ATTTATTAGA CAAGGGAGAG AAGATTGCCC 301 AGGAAGCTAC AGTTTTAAAG GATGAGCTTA CGGCTTCACT TGAGGAAGTT CGCAAAGAAA 361 GTGAAGCTCT GAAAGTATCA GCTGAGAGAT TTACAGATGA CCCCTGTTTT CTCCCAAAAA 421 GGGAGGCTGT GGTTCAAGCT GCCCGTGCCT TGCTGGCTGC GGTGACGAGA CTCCTTATCC 481 TTGCGGACAT GATTGATGTC ATGTGCCTCT TGCAACATGT GTCAGCTTTT CAAAGGACAT 541 TTGAGTCTCT CAAAAATGTT GCCAACAAAT CTGACCTCCA GAAAACCTAC CAGAAGCTTG 601 GGAAGGAGCT GGAAAATTTG GATTATTTAG CCTTCAAACG TCAGCAGGAC TTAAAATCTC 661 CAAATCAGAG AGATGAAATT GCAGGAGCCC GAGCTTCACT GAAGGAGAAC TCTCCCCTCT 721 TGCATTCAAT TTGTTCAGCT TGTTTGGAGC ATTCTGATGT TGCTTCCCTC AAAGCAAGCA 781 AGGACACAGT TTGTGAAGAA ATTCAGAATG CTCTCAATGT AATTTCAAAT GCTTCACAAG 841 GGATCCAGAA TATGACAACC CCACCAGAAC CTCAGGCAGC AACCCTGGGA AGTGCCCTTG 901 ATGAGCTGGA GAATTTAATT GTCCTGAATC CACTCACAGT AACTGAGGAG GAAATACGAC 961 CATCACTAGA GAAACGCCTT GAAGCCATTA TCAGTGGGGC TGCTCTGCTG GCGGATTCTT 1021 CATGTACGAG GGACTTACAC CGAGAGCGGA TTATCGCAGA ATGCAACGCC ATTCGCCAGG 1081 CTCTTCAGGA TCTGCTTTCA GAGTACATGA ACAACGCTGG AAAAAAAGAA AGGAGTAATA 1141 CCCTGAATAT TGCTTTAGAC AACATGTGTA AGAAGACAAG AGACCTTCGC AGACAGCTCC 1201 GCAAGGCTAT TATAGATCAT GTGTCAGACT CTTTCCTGGA TACGACAGTC CCTCTTTTGG 1261 TTCTCATTGA AGCTGCTAAG AATGGCCGGG AAAAGGAAAT AAAAGAATAT GCTGCGATAT 1321 TTCATGAACA CACCAGCAGG CTTGTAGAGG TGGCAAATCT TGCTTGTTCC ATGTCAACAA 1381 ATGAAGATGG AATTAAAATT GTCAAAATTG CAGCCAATCA TTTGGAAACC TTGTGTCCAC 1441 AGATTATTAA TGCTGCACTT GCTTTGGCTG CAAGACCCAA AAGTCAAGCG GTCAAAAACA 1501 CCATGGAAAT GTACAAGCGT ACATGGGAGA ATCATATACA TGTCCTCACT GAAGCCGTAG 1561 ATGACATTAC AAGCATTGAT GACTTCCTTG CTGTATCTGG TATGTTTTTA TTCTTTTTGC 1621 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1681 aac