Construct: ORF ccsbBroadEn_12755

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006356.1_s300c1, BRDN0000391023
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT16 (83851)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83851 SYT16 synaptotagmin 16 NM_001367650.1 59.8% 59.8% 1_408del
2 human 83851 SYT16 synaptotagmin 16 XM_024449728.1 59.8% 59.8% 1_408del
3 human 83851 SYT16 synaptotagmin 16 XM_024449729.1 59.8% 59.8% 1_408del
4 human 83851 SYT16 synaptotagmin 16 XM_024449730.1 59.8% 59.8% 1_408del
5 human 83851 SYT16 synaptotagmin 16 XM_011537229.2 47.8% 47.8% 1_663del
6 human 83851 SYT16 synaptotagmin 16 NM_001367657.1 43.9% 43.9% 1_777del
7 human 83851 SYT16 synaptotagmin 16 NM_001367654.1 43.7% 43.7% 1_783del
8 human 83851 SYT16 synaptotagmin 16 XM_011537227.2 40.1% 40.1% 1_906del
9 human 83851 SYT16 synaptotagmin 16 NM_001367659.1 38% 38% 1_990del
10 human 83851 SYT16 synaptotagmin 16 NM_001367652.1 37.9% 37.9% 1_996del
11 human 83851 SYT16 synaptotagmin 16 NM_001367656.1 31.4% 31.4% 1_1326del
12 human 83851 SYT16 synaptotagmin 16 NM_001367661.1 31.4% 31.4% 1_1326del
13 human 83851 SYT16 synaptotagmin 16 NM_001367663.1 31.4% 31.4% 1_1326del
14 human 83851 SYT16 synaptotagmin 16 XM_006720272.3 31.4% 31.4% 1_1326del
15 human 83851 SYT16 synaptotagmin 16 XM_024449720.1 31.4% 31.4% 1_1326del
16 human 83851 SYT16 synaptotagmin 16 XM_024449721.1 31.4% 31.4% 1_1326del
17 human 83851 SYT16 synaptotagmin 16 XM_024449723.1 31.4% 31.4% 1_1326del
18 human 83851 SYT16 synaptotagmin 16 XM_024449724.1 31.4% 31.4% 1_1326del
19 human 83851 SYT16 synaptotagmin 16 XM_024449725.1 19.5% 19.3% (many diffs)
20 human 83851 SYT16 synaptotagmin 16 XM_017021697.2 18.8% 18.5% (many diffs)
21 human 83851 SYT16 synaptotagmin 16 XM_024449726.1 16.4% 15.6% (many diffs)
22 human 83851 SYT16 synaptotagmin 16 XM_024449727.1 15.6% 15.3% (many diffs)
23 human 83851 SYT16 synaptotagmin 16 XR_002957566.1 14.7% 1_1755del;2054_2170del;2239_2240ins242
24 mouse 238266 Syt16 synaptotagmin XVI XM_006515841.3 34.2% 35.3% (many diffs)
25 mouse 238266 Syt16 synaptotagmin XVI NM_172804.2 33.3% 34.4% (many diffs)
26 mouse 238266 Syt16 synaptotagmin XVI XM_006515840.3 28.6% 29.5% (many diffs)
27 mouse 238266 Syt16 synaptotagmin XVI XM_006515837.3 27.9% 28.8% (many diffs)
28 mouse 238266 Syt16 synaptotagmin XVI XM_006515838.3 27.9% 28.8% (many diffs)
29 mouse 238266 Syt16 synaptotagmin XVI XM_006515839.3 27.9% 28.8% (many diffs)
30 mouse 238266 Syt16 synaptotagmin XVI XM_017315058.1 27.9% 28.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
675
ORF length:
609
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CCGAGAGAGA ATGATGGGAG AGAAACTATT CTATCTCAGC CACCTGCACC
121CAGAAGGGGA AATGAAAGTG ACTCTGGTTC TGGAGCCAAG AAGTAATATA AGCAGTGGAG
181GGTCTCCGCT CAGCCCATCT GCGGTTTCTC ACAGTGATAG TACTTCATCC ACGCAGTCGC
241TGTCTCATGG AGGGGCGCCA GAGCTGTTGG TGGGGCTCTC GTACAATGCC ACAACGGGGC
301GATTATCTGT GGAAATGATC AAAGGCAGCC ATTTCCGAAA CCTCGCTGTT AACCGAGCAC
361CTGATACATA TGGAAAACTC TTTCTCCTCA ATTCTGTGGG TCAAGAGATG TCCCGTTGCA
421AGACGTCCAT TCGGCGTGGT CAGCCCAATC CTGTCTATAA GGAGACCTTT GTTTTCCAGG
481TGGCCCTCTT TCAGCTGTCT GATGTCACGT TGATGATTTC CGTTTATAAC AGGCGTACTA
541TGAAGCGTAA AGAGATGATT GGCTGGATTG CCCTGGGCCA GAACAGCAGT GGAGAGGAGG
601AACAAGATCA CTGGGAGGAG ATGAAGGAAA CCAAAGGCCA GCAGATCTGC AGATGGCACA
661CTTTGCTGGA ATCCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
721tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)