Construct: ORF ccsbBroadEn_13018

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014070.1_s300c1, BRDN0000395545
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CASC4 (113201)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113201 CASC4 cancer susceptibility 4 XM_017021880.2 64.8% 60.5% 482_572del;623_819del
2 human 113201 CASC4 cancer susceptibility 4 NM_177974.3 46.5% 43.5% 482_572del;623_1140del
3 human 113201 CASC4 cancer susceptibility 4 NM_138423.4 40.5% 37.9% 482_572del;623_1308del
4 human 113201 CASC4 cancer susceptibility 4 NR_157849.2 10.2% 1_311del;793_883del;934_5198del
5 mouse 319996 Casc4 cancer susceptibility candi... NM_199038.3 47% 47.2% (many diffs)
6 mouse 319996 Casc4 cancer susceptibility candi... NM_001205370.1 42.9% 43.1% (many diffs)
7 mouse 319996 Casc4 cancer susceptibility candi... NM_177054.5 40.4% 40.6% (many diffs)
8 mouse 319996 Casc4 cancer susceptibility candi... NM_001205369.1 37.3% 37.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
597
ORF length:
531
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GGGTTTCGGG GCCAACCGGC GGGCTGGCCG CCTGCCCTCT CTCGTGCTGG
121TGGTGCTGCT GGTGGTGATC GTCGTCCTCG CCTTCAACTA CTGGAGCATC TCCTCCCGCC
181ACGTCCTGCT TCAGGAGGAG GTGGCCGAGC TGCAGGGCCA GGTCCAGCGC ACCGAAGTGG
241CCCGCGGGCG GCTGGAAAAG CGCAATTCGG ACCTCTTGCT GTTGGTGGAC ACGCACAAGA
301AACAGATCGA CCAGAAGGAG GCCGACTACG GCCGCCTCAG CAGCCGGCTG CAGGCCAGAG
361AGGGCCTCGG GAAGAGATGC GAGGATGACA AGGTTAAACT ACAGAACAAC ATATCGTATC
421AGATGGCAGA CATACATCAT TTAAAGGAGC AACTTGCTGA GCTTCGTCAG GAATTTCTTC
481GACAAGAAGA CCAGCTTCAG GACTATAGGA AGAACAATAC TTACCTTGTG AAGAGGTTAG
541AATATGAAAG CAAGAGACCC AAAAGATTCA ATCAAATGAT GGAAAGGAAT TGGATATACC
601CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
661aac

Download FASTA (ORF) (Full)