Construct: ORF ccsbBroadEn_13244

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007581.1_s300c1, BRDN0000397295
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPM3P9 (147804)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7170 TPM3 tropomyosin 3 NM_001278191.2 52.4% 46.8% (many diffs)
2 human 7170 TPM3 tropomyosin 3 NM_001278188.2 47.8% 47.8% (many diffs)
3 human 7170 TPM3 tropomyosin 3 NM_153649.4 35% 35% (many diffs)
4 human 7170 TPM3 tropomyosin 3 NM_001043351.2 33.5% 29.8% (many diffs)
5 human 7170 TPM3 tropomyosin 3 NM_001364680.2 30.5% 30.5% (many diffs)
6 human 7170 TPM3 tropomyosin 3 NM_001278189.2 29.4% 27% (many diffs)
7 human 7170 TPM3 tropomyosin 3 NM_001364683.1 29.4% 27% (many diffs)
8 human 7170 TPM3 tropomyosin 3 NM_001364679.2 29.1% 25.9% (many diffs)
9 human 7170 TPM3 tropomyosin 3 NM_001278190.1 27.5% 27.8% (many diffs)
10 human 7170 TPM3 tropomyosin 3 NM_001364682.1 25.7% 23.5% (many diffs)
11 human 147804 TPM3P9 tropomyosin 3 pseudogene 9 NR_003148.3 9.3% (many diffs)
12 human 7170 TPM3 tropomyosin 3 NR_103461.2 8% (many diffs)
13 mouse 59069 Tpm3 tropomyosin 3, gamma XM_006501841.3 46.3% 47.8% (many diffs)
14 mouse 59069 Tpm3 tropomyosin 3, gamma NM_001253738.1 34% 35% (many diffs)
15 mouse 59069 Tpm3 tropomyosin 3, gamma NM_001253740.1 31.2% 29.8% (many diffs)
16 mouse 59069 Tpm3 tropomyosin 3, gamma NM_022314.3 29.5% 30.5% (many diffs)
17 mouse 59069 Tpm3 tropomyosin 3, gamma NM_001271764.1 29.5% 27% (many diffs)
18 mouse 59069 Tpm3 tropomyosin 3, gamma XM_017319677.1 29.5% 27% (many diffs)
19 mouse 59069 Tpm3 tropomyosin 3, gamma XM_006501835.2 28.8% 26.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
342
ORF length:
276
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TGAGCAGATC AGACTGATGG ACCAGAACCT GAAGTGTCTG AGTGCAGCTG
121AAGAAAAGTA CTCTCAAAAA GAAGACAAAT GTGAGGAAGA GAGGAAGATT CTTACTGATA
181ATCTTAAGGA GGCAGAGACC CATGCTGAGT TGGCTGAGAG ATCAGTAGCC AAGCTGGAAA
241AGACAATTGA TGACTTGGAA GATAAACTGA AATGCACCAA AGAGGAACAC CTCTGTACAC
301AAAGGATGCT GGACCAGACT CTGCTTGACC TGAATGAGAT GTACCCAACT TTCTTGTACA
361AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)