Construct: ORF ccsbBroadEn_13317

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003971.1_s300c1, BRDN0000384986
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMNTD1 (160492)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 160492 LMNTD1 lamin tail domain containing 1 NM_001256266.1 99.8% 99.6% 805A>T
2 human 160492 LMNTD1 lamin tail domain containing 1 NM_001145727.3 89.4% 89.2% 1_102del;907A>T
3 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520587.2 88.2% 82.3% (many diffs)
4 human 160492 LMNTD1 lamin tail domain containing 1 NM_001352232.2 80% 79.8% 1_216del;1021A>T
5 human 160492 LMNTD1 lamin tail domain containing 1 NM_001352233.2 80% 79.8% 1_216del;1021A>T
6 human 160492 LMNTD1 lamin tail domain containing 1 NM_001352234.2 80% 79.8% 1_216del;1021A>T
7 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520582.1 80% 79.8% 1_216del;1021A>T
8 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520583.1 80% 79.8% 1_216del;1021A>T
9 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520584.2 80% 79.8% 1_216del;1021A>T
10 human 160492 LMNTD1 lamin tail domain containing 1 NM_152590.3 74.9% 74.7% 1_291del;1096A>T
11 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520588.1 74.7% 74.5% 0_1ins219;586A>T
12 human 160492 LMNTD1 lamin tail domain containing 1 NM_001145728.2 71% 70.9% 1_354del;1159A>T
13 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520575.1 71% 70.9% 1_354del;1159A>T
14 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520576.2 71% 70.9% 1_354del;1159A>T
15 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520577.2 71% 70.9% 1_354del;1159A>T
16 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520578.2 71% 70.9% 1_354del;1159A>T
17 human 160492 LMNTD1 lamin tail domain containing 1 XM_017018891.1 71% 70.9% 1_354del;1159A>T
18 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520579.2 68.1% 67.7% (many diffs)
19 human 160492 LMNTD1 lamin tail domain containing 1 NM_001145729.1 61.2% 61.1% 1_354del;677_678ins120;1039A>T
20 human 160492 LMNTD1 lamin tail domain containing 1 XM_011520580.1 61.2% 61.1% 1_354del;677_678ins120;1039A>T
21 human 160492 LMNTD1 lamin tail domain containing 1 XM_017018894.1 39.6% 36.4% (many diffs)
22 human 160492 LMNTD1 lamin tail domain containing 1 XR_931277.1 38% (many diffs)
23 human 160492 LMNTD1 lamin tail domain containing 1 XR_931276.1 37.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
939
ORF length:
873
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TGGGGATGGA GAAGATTATT TCCTTTCTTT GTTTGGTGAT TCAAAGAAAC
121TTACAGCACA CTCAAACTAC ACTCAGAAAA CTTTAAAATA CTTTTCTATG ATTCTTGAAG
181AAGTTGGCCA ATTTACCTCC AGTTCTCTTG GAGATGTTGA AATAGCTGAA GTGAATGTCA
241AGGGTTTGTT CGTGAAGCTC ATTAACTCTT CCCTTGACAA AGAAATGGCA ATTGGAGATC
301ATATTCTCCA GCAAAATGTG AATGGACAAA CCATTTCTTT GTACCGATTC CTTCCAAACA
361TCGTAATGCA GGCAAATTCC ACAGTAACAG TGTGGGCAGC AGCATCTGAA GCAAAGCATC
421AACCTCCATC AGATTTTCTT TGGAAGGAAC AAGACAAGTT TAGAGCAAGT CCTGATTGTA
481TAACAATCCT GTGCAAACCG AACGGTCAAG CCATTGCGTG GTACACCCCT ATCCACTGGA
541AGCAAGCGTG GGAAAAATTA GATGCTGACG TTGAATTTAA CAGATGTTCA GTAGTATCTC
601CAACATTCCG AAAGCGTGTG TTTCAGTGGA CAGCATCTAC AGCTACAATA ACTAAAGAAA
661AACAAGATCA ACCTAAGAAA GATATCTCAA ATTATCAGGT GGAACAAGCT CAAGTTCTTC
721TTAAGAGAGA GAAGGAAATC CCACCAACCG TTTTCCCTAA TCGCAGCCCT TGGTGCCAGA
781ATCCCTATGT CTCTGCACAT CCTTACTGTC CTCTGATTGA ACCACACAAT ACATCCACCG
841CTGGAGGCAG ATTGGATAGA CAGCCCAGGT CTCGGTCAAC CAGACCTAAT CGAGCCTCAG
901GGTCTAAGAA AAAGAAGACA TCTGAGTCAC AAAAGCAATA CCCAACTATC TTGTACAAAG
961Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)