Transcript: Mouse XM_006497445.3

PREDICTED: Mus musculus BEN domain containing 7 (Bend7), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bend7 (209645)
Length:
3621
CDS:
264..1412

Additional Resources:

NCBI RefSeq record:
XM_006497445.3
NBCI Gene record:
Bend7 (209645)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497445.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246972 GGCTTGTCCTGTCCGAATAAT pLKO_005 1493 3UTR 100% 15.000 21.000 N Bend7 n/a
2 TRCN0000246974 GACGAAAGCATGGAAATTAAA pLKO_005 255 5UTR 100% 15.000 12.000 N Bend7 n/a
3 TRCN0000216656 CAACTCTGGTTTGGCATAATA pLKO.1 1536 3UTR 100% 15.000 10.500 N Bend7 n/a
4 TRCN0000191238 CAAAGAGACACAACCCATTTA pLKO.1 61 5UTR 100% 13.200 9.240 N Bend7 n/a
5 TRCN0000246973 CAAAGAGACACAACCCATTTA pLKO_005 61 5UTR 100% 13.200 9.240 N Bend7 n/a
6 TRCN0000257606 CTGCGAATCATGTGGATAAAC pLKO_005 1198 CDS 100% 13.200 9.240 N Bend7 n/a
7 TRCN0000201208 GCTCAAGACCATGAGGAAATT pLKO.1 641 CDS 100% 13.200 9.240 N Bend7 n/a
8 TRCN0000172673 GCTCAGGAAGCCTTCTGTTTA pLKO.1 1030 CDS 100% 13.200 9.240 N BEND7 n/a
9 TRCN0000246971 TTATCACCATGAGGTGTATAA pLKO_005 4 5UTR 100% 13.200 9.240 N Bend7 n/a
10 TRCN0000190732 GCCAGAAGAAGGTTGAAACGA pLKO.1 1269 CDS 100% 3.000 2.100 N Bend7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497445.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13437 pDONR223 100% 76.3% 76.4% None (many diffs) n/a
2 ccsbBroad304_13437 pLX_304 0% 76.3% 76.4% V5 (many diffs) n/a
3 TRCN0000478485 GACCTCCTCGGGGGACTGGACCCA pLX_317 23.8% 76.3% 76.4% V5 (many diffs) n/a
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